SRR3551751_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551751_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	226016
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC	5497	2.4321286988531785	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG	5147	2.277272405493416	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	4643	2.054279343055359	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1712	0.7574684978054651	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAAGAT	1167	0.5163351267166927	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1001	0.44288899900891976	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCT	971	0.4296156024352258	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTA	885	0.39156519892396996	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTC	833	0.3685579781962339	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	827	0.36590329888149514	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	367	0.162377884751522	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	343	0.1517591674925669	Illumina Single End Adapter 1 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATG	257	0.11370876398131106	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTT	237	0.10485983293218179	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	35	1.2061355E-7	45.000004	40
ACGGGAT	35	1.2061355E-7	45.000004	5
TCGTTGG	20	7.021251E-4	45.0	12
CATATTC	20	7.021251E-4	45.0	33
CGTATGG	20	7.021251E-4	45.0	2
CAACGAG	45	3.8198777E-10	45.0	14
CGTGCGG	20	7.021251E-4	45.0	2
TAGACGG	20	7.021251E-4	45.0	2
CGTTGTG	20	7.021251E-4	45.0	34
ATCGTTG	20	7.021251E-4	45.0	11
ACGGCTA	20	7.021251E-4	45.0	30
CTAGTAG	20	7.021251E-4	45.0	1
CGCTAGG	25	3.880832E-5	45.0	2
GAGCGAT	20	7.021251E-4	45.0	25
TCTCGTA	20	7.021251E-4	45.0	28
CGCAGCG	20	7.021251E-4	45.0	13
TTTGCGG	25	3.880832E-5	45.0	2
CACGTGA	25	3.880832E-5	45.0	43
CACCGTG	20	7.021251E-4	45.0	16
ATACGCC	25	3.880832E-5	45.0	28