SRR3551747_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551747_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	698232
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	17819	2.5520170946046585	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	16672	2.387745047491378	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	16583	2.374998567811272	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	5883	0.8425566287423091	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCATGCACT	3662	0.5244675122308917	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT	3387	0.48508232220809133	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	3262	0.46717996310681836	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2946	0.42192279929880044	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTA	2737	0.3919900548814721	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTC	2542	0.3640623746834863	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTT	1495	0.21411221485122425	No Hit
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	1326	0.18990822534630322	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	1289	0.18460912705232643	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATG	944	0.13519861593281315	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTCATGCAC	808	0.11572084923062821	No Hit
TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	709	0.10154218082242006	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTG	20	7.031381E-4	45.000004	39
TAACGAA	20	7.031381E-4	45.000004	45
CATAGCG	20	7.031381E-4	45.000004	1
TTACGCG	20	7.031381E-4	45.000004	1
TACGTAA	20	7.031381E-4	45.000004	14
TACCGCT	20	7.031381E-4	45.000004	29
CGCTCGA	30	2.1642736E-6	44.999996	41
ACATGCG	30	2.1642736E-6	44.999996	1
CTTAGCG	25	3.8892278E-5	44.999996	1
CTCGAAT	230	0.0	44.021736	43
ACGGCCA	95	0.0	42.63158	30
CCGATGA	1800	0.0	42.625	18
CGTTTTT	2015	0.0	42.543427	1
TAAGCCG	85	0.0	42.352943	45
ACTGCGA	80	0.0	42.187504	30
TGATACC	1935	0.0	41.62791	4
CGATGAA	1865	0.0	41.621983	19
GATGAAT	2025	0.0	41.555557	20
GATACCT	1940	0.0	41.40464	5
TACGGGT	60	3.6379788E-12	41.249996	4