SRR3551744_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551744_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	959366
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8699	0.9067446626209393	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC	1537	0.16020997200234322	Illumina PCR Primer Index 2 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGCT	1320	0.1375908673019473	Illumina PCR Primer Index 2 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC	1099	0.11455482057942433	Illumina PCR Primer Index 2 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCC	1069	0.11142775541347098	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTG	1030	0.10736257069773163	Illumina PCR Primer Index 2 (95% over 22bp)
CGTTTCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTT	1012	0.10548633159815962	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	20	7.0327026E-4	45.0	21
ACCGAAT	20	7.0327026E-4	45.0	24
GTTAACG	20	7.0327026E-4	45.0	1
CGTAGAC	20	7.0327026E-4	45.0	43
TATCGCG	25	3.8903214E-5	45.0	1
TAGTCCG	25	3.8903214E-5	45.0	1
GATAGCG	45	3.8380676E-10	45.0	1
TAGCGCG	30	2.165125E-6	44.999996	1
CGTTTTT	6395	0.0	43.487095	1
CGCACGG	55	6.002665E-11	40.909092	2
CGACGGT	50	1.0804797E-9	40.5	28
TCGTTAG	40	3.457426E-7	39.375	1
TATTGCG	40	3.457426E-7	39.375	1
ATTGCGG	115	0.0	39.130432	2
CGGCGAT	35	6.24721E-6	38.571426	28
TCGATTG	65	9.094947E-12	38.07692	1
TCAAGCG	155	0.0	37.741936	17
GTCGAGA	30	1.1397814E-4	37.499996	9
CGACGTT	30	1.1397814E-4	37.499996	27
TCGATAG	30	1.1397814E-4	37.499996	1