SRR3551743_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551743_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	988267
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8083	0.8178963782054849	No Hit
GCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	1791	0.18122632851243642	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGC	1560	0.157852078436293	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGCT	1512	0.15299509140748402	TruSeq Adapter, Index 16 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTG	1361	0.13771581971268898	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	1136	0.11494869301514672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGGTT	20	7.032806E-4	45.0	10
AACGCGC	20	7.032806E-4	45.0	5
ACGTGCG	20	7.032806E-4	45.0	1
AGCGCGC	25	3.8904076E-5	45.0	25
GTCAACG	20	7.032806E-4	45.0	1
CCGCATT	20	7.032806E-4	45.0	21
CGTTTTT	6875	0.0	43.429092	1
TTTAGCG	60	3.6379788E-12	41.249996	1
TATTGCG	55	6.002665E-11	40.909092	1
CGCCTAA	55	6.002665E-11	40.909092	14
CTACGAG	50	1.0804797E-9	40.5	1
GAGTACG	45	1.927765E-8	40.0	1
CGCCGGT	210	0.0	39.64286	28
GCGTAAC	40	3.4575714E-7	39.375	22
TAGTACG	40	3.4575714E-7	39.375	1
CGTTATT	180	0.0	38.75	1
ATTAGCG	70	0.0	38.571426	1
CGAAACG	35	6.247401E-6	38.571426	2
GGCGCCG	35	6.247401E-6	38.571426	43
GCGTCCC	35	6.247401E-6	38.571426	7