SRR3551740_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551740_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	690646
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1893	0.27409121315406154	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1750	0.25338596039070665	No Hit
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	1200	0.17375037283934172	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1011	0.1463846891171454	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCC	728	0.10540855952253397	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	25	3.889182E-5	45.000004	1
CCTGTCG	25	3.889182E-5	45.000004	39
ACGATAG	30	2.164239E-6	45.000004	1
TATACGG	50	2.1827873E-11	45.000004	2
TCGGCAT	20	7.031329E-4	45.0	32
TGTTACG	20	7.031329E-4	45.0	1
GTATACG	40	6.8084773E-9	45.0	1
GCCACGC	20	7.031329E-4	45.0	11
GTGCGAA	20	7.031329E-4	45.0	34
CGAAGTA	20	7.031329E-4	45.0	19
TACGGGT	60	3.6379788E-12	41.250004	4
TAAGCGG	80	0.0	39.375	2
TACGTGT	40	3.4555524E-7	39.375	33
CACGACC	195	0.0	39.23077	27
CGTTTTT	960	0.0	39.14063	1
ACAACGA	295	0.0	38.898304	13
CACAACG	295	0.0	38.898304	12
CATACGA	145	0.0	38.793102	18
GCGAATG	35	6.244667E-6	38.571426	1
TAGTAAC	35	6.244667E-6	38.571426	11