##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551740_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 690646 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.173331924024755 31.0 31.0 33.0 28.0 34.0 2 31.09697587476073 31.0 31.0 34.0 28.0 34.0 3 30.920103786889378 31.0 31.0 34.0 27.0 34.0 4 34.7935440153132 35.0 35.0 37.0 32.0 37.0 5 34.5420157359921 35.0 35.0 37.0 32.0 37.0 6 34.75572435082517 36.0 35.0 37.0 32.0 37.0 7 35.39810988552746 37.0 35.0 37.0 33.0 37.0 8 35.11280598164617 37.0 35.0 37.0 32.0 37.0 9 37.04018846123774 39.0 37.0 39.0 32.0 39.0 10 36.404251961207336 37.0 35.0 39.0 32.0 39.0 11 36.57804866747943 38.0 35.0 39.0 32.0 39.0 12 36.55764168618945 39.0 35.0 39.0 33.0 39.0 13 36.62062909218326 39.0 35.0 39.0 33.0 39.0 14 37.480606562551586 39.0 36.0 41.0 33.0 41.0 15 37.670732908031034 39.0 36.0 41.0 33.0 41.0 16 37.64758935836883 39.0 36.0 41.0 33.0 41.0 17 37.46258285720905 39.0 36.0 41.0 33.0 41.0 18 37.44892318206433 39.0 36.0 41.0 33.0 41.0 19 37.412910521453824 39.0 35.0 41.0 33.0 41.0 20 37.551938330201 39.0 35.0 41.0 33.0 41.0 21 37.25995227656426 39.0 35.0 41.0 32.0 41.0 22 37.47321058834772 39.0 35.0 41.0 33.0 41.0 23 37.59958792203241 39.0 35.0 41.0 33.0 41.0 24 37.50761750592923 39.0 35.0 41.0 33.0 41.0 25 37.06782490595761 39.0 35.0 41.0 32.0 41.0 26 37.240742724927095 39.0 35.0 41.0 33.0 41.0 27 37.36965102237615 39.0 35.0 41.0 33.0 41.0 28 37.26790135612166 39.0 35.0 41.0 33.0 41.0 29 37.33136947148032 39.0 35.0 41.0 33.0 41.0 30 36.96279714933555 39.0 35.0 41.0 32.0 41.0 31 36.94728558480032 39.0 35.0 40.0 32.0 41.0 32 37.0013798675443 39.0 35.0 40.0 32.0 41.0 33 37.07427104478995 39.0 35.0 41.0 32.0 41.0 34 36.93292656440492 39.0 35.0 41.0 32.0 41.0 35 36.919329149810466 39.0 35.0 41.0 32.0 41.0 36 36.804021162795415 39.0 35.0 41.0 31.0 41.0 37 36.92075535078752 39.0 35.0 41.0 32.0 41.0 38 36.68222070351526 39.0 35.0 41.0 31.0 41.0 39 36.72486049292981 39.0 35.0 41.0 32.0 41.0 40 36.62824804603227 39.0 35.0 40.0 31.0 41.0 41 36.500418448814585 38.0 35.0 40.0 31.0 41.0 42 36.59386429516714 39.0 35.0 40.0 31.0 41.0 43 36.56737025914868 39.0 35.0 40.0 31.0 41.0 44 36.54129322402504 39.0 35.0 40.0 31.0 41.0 45 36.53818598819077 38.0 35.0 40.0 31.0 41.0 46 36.3980143228224 38.0 35.0 40.0 31.0 41.0 47 36.33214700439878 38.0 35.0 40.0 31.0 41.0 48 36.279519464385515 38.0 35.0 40.0 31.0 41.0 49 36.313292193106165 38.0 35.0 40.0 31.0 41.0 50 36.25095345517096 38.0 35.0 40.0 31.0 41.0 51 35.31902161165054 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 28.0 9 52.0 10 48.0 11 50.0 12 46.0 13 45.0 14 69.0 15 67.0 16 108.0 17 151.0 18 247.0 19 412.0 20 664.0 21 951.0 22 1443.0 23 2030.0 24 2930.0 25 3870.0 26 5222.0 27 6295.0 28 7530.0 29 9019.0 30 11573.0 31 15069.0 32 20880.0 33 31811.0 34 61795.0 35 61373.0 36 58679.0 37 88971.0 38 148489.0 39 150702.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93523165268459 22.324606238217555 24.57756940603435 11.16259270306351 2 33.129417965209385 24.11365591055331 24.165925814382476 18.591000309854834 3 33.757380771046236 23.13674443926411 26.173032204631607 16.932842585058047 4 29.906058965084863 25.851594014878827 24.260330183625186 19.98201683641113 5 25.477017169432674 30.189561656767722 23.815094853224373 20.51832632057523 6 27.342082629885645 32.91715292639065 23.986528554425856 15.754235889297846 7 78.35504730353901 7.023134862143558 9.370502399203065 5.251315435114371 8 79.43852567016967 5.671067377498748 9.307517889048803 5.5828890632827814 9 73.07984119215922 8.227804113829661 11.63664163696018 7.0557130570509345 10 45.01741847487715 22.797062460363197 17.772925637736265 14.412593427023396 11 35.7023714030053 23.580821433845994 22.196030962316442 18.520776200832266 12 32.52462187575111 22.037628539077907 26.437711939256868 19.000037645914112 13 28.193604248775785 22.945184653208734 27.54812161367763 21.31308948433785 14 22.3385062680447 25.08825071020465 29.56594261025185 23.0073004114988 15 23.19712269382578 24.474477518149673 32.334075633537296 19.99432415448725 16 28.452492304306404 24.367331454898746 28.854434833474745 18.325741407320102 17 26.339108602670542 24.998914060169756 26.939271348853104 21.7227059883066 18 27.2033719155689 25.402738885043856 27.984669425436476 19.409219773950763 19 26.56599763120325 28.22690640356999 25.443715014638467 19.76338095058829 20 28.94377148350964 27.722306362449068 25.88750242526562 17.446419728775666 21 27.357430579486454 28.384584866921692 26.056764246806612 18.201220306785242 22 25.22609267265719 24.907405530474367 28.238924137691377 21.62757765917706 23 25.57156633065275 25.164556082276597 28.9020713940282 20.361806193042455 24 27.842194119708214 22.43841273242732 28.943047523622813 20.776345624241653 25 24.90016593160606 24.345757450271197 25.884027417808834 24.87004920031391 26 22.22151435033288 25.35626066030933 28.08269359411334 24.33953139524445 27 22.51674519218239 25.362631507313445 28.84386501912702 23.27675828137715 28 20.206733985283343 28.330143083432034 28.152628119181173 23.310494812103453 29 23.93860240991767 27.07436226373569 27.295170029219022 21.691865297127617 30 27.0273048710917 24.224132189283658 28.23993768153294 20.5086252580917 31 26.87252224728732 25.344242926187942 26.614068567688804 21.16916625883593 32 27.55318933288544 25.27054380970859 26.70818335297678 20.468083504429185 33 27.63977493535038 25.356695036241433 26.338529434761078 20.665000593647108 34 23.013526466525544 26.387034747178728 29.999594582463374 20.599844203832355 35 21.94351375378993 27.428233856418483 28.566733174448274 22.061519215343317 36 23.689270624893215 31.307500514011522 25.375952369231126 19.62727649186414 37 24.280021892546976 30.75627745617871 24.79533653999299 20.168364111281324 38 23.377099121691867 29.80166394940389 24.72076867164944 22.100468257254803 39 24.951422291593666 26.506053752573678 26.26902928562534 22.273494670207313 40 24.551217266153717 24.47288480639865 27.058869522157515 23.917028405290118 41 21.31439261213415 26.09368620103497 25.79165013624925 26.80027105058163 42 22.237586259820517 26.0431538009342 25.34062312675379 26.378636812491496 43 22.967916993655216 23.969732685051387 26.7119479443883 26.3504023769051 44 22.103074512847392 24.402515905398715 27.394207741737446 26.100201840016446 45 23.52377339476374 24.715845744418992 26.510252719917293 25.250128140899967 46 22.932153375245782 26.431920260162222 26.631877980904832 24.004048383687156 47 21.02336073762825 25.977852619142077 28.62537392528155 24.373412717948124 48 21.36506980421229 23.828994883051518 30.3263900753787 24.479545237357488 49 23.625127778920024 23.218262322521234 29.62038439374151 23.536225504817228 50 20.334150925365527 23.81321255751861 29.891579767348254 25.961056749767607 51 20.11348795185956 23.09113496639378 29.822079618212516 26.97329746353414 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 241.0 1 662.0 2 1083.0 3 2320.5 4 3558.0 5 2414.5 6 1271.0 7 1265.0 8 1259.0 9 1233.0 10 1207.0 11 1154.5 12 1102.0 13 1225.5 14 1349.0 15 1237.0 16 1125.0 17 1228.5 18 1332.0 19 1466.5 20 1601.0 21 2019.0 22 2437.0 23 2534.0 24 2631.0 25 3100.0 26 4784.5 27 6000.0 28 7009.5 29 8019.0 30 9289.0 31 10559.0 32 12389.5 33 14220.0 34 15650.5 35 17081.0 36 18244.5 37 19408.0 38 20172.5 39 20937.0 40 23387.0 41 25837.0 42 29249.0 43 32661.0 44 35576.5 45 38492.0 46 43600.0 47 48708.0 48 53347.5 49 57987.0 50 58333.5 51 58680.0 52 56024.5 53 53369.0 54 50057.0 55 46745.0 56 44919.5 57 43094.0 58 42473.0 59 41852.0 60 40293.0 61 38734.0 62 35711.5 63 32689.0 64 27258.0 65 21827.0 66 16917.0 67 12007.0 68 9310.0 69 6613.0 70 5486.5 71 4360.0 72 3765.5 73 3171.0 74 2483.5 75 1510.0 76 1224.0 77 827.5 78 431.0 79 292.5 80 154.0 81 121.0 82 88.0 83 87.5 84 87.0 85 58.0 86 29.0 87 23.5 88 18.0 89 11.0 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 690646.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.209803861386895 #Duplication Level Percentage of deduplicated Percentage of total 1 73.748923971653 21.541916042003187 2 9.133724496519022 5.335886021345308 3 3.1331385169756047 2.7455508465424208 4 1.6011593046254615 1.870781969557775 5 1.0737619288526712 1.5682187667805498 6 0.8136265835200253 1.425952375261816 7 0.691007383850641 1.4128933104333117 8 0.6498019000902852 1.5184468840315004 9 0.5812451176119646 1.528025029275082 >10 8.283113115294624 52.84316222860848 >50 0.23139642866417254 4.264781390869331 >100 0.055094387776978504 2.7129808964370947 >500 0.002003432282799218 0.374966028773095 >1k 0.002003432282799218 0.8564382100810372 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC 1893 0.27409121315406154 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1750 0.25338596039070665 No Hit CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT 1200 0.17375037283934172 No Hit CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC 1011 0.1463846891171454 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCC 728 0.10540855952253397 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.17939725995662031 0.0 2 0.0 0.0 0.0 0.7928808680568628 0.0 3 1.447919773661181E-4 0.0 0.0 1.0692887528487822 0.0 4 1.447919773661181E-4 0.0 0.0 1.4499468613443067 0.0 5 1.447919773661181E-4 0.0 0.0 2.4365593951170355 0.0 6 1.447919773661181E-4 0.0 0.0 3.0278898306802615 0.0 7 1.447919773661181E-4 0.0 0.0 3.613283795171477 0.0 8 1.447919773661181E-4 0.0 0.0 4.4913023459196175 0.0 9 1.447919773661181E-4 0.0 0.0 4.852703121425448 0.0 10 1.447919773661181E-4 0.0 0.0 5.61575684214489 0.0 11 1.447919773661181E-4 0.0 0.0 6.726021724588284 0.0 12 1.447919773661181E-4 0.0 0.0 7.537580757725376 0.0 13 1.447919773661181E-4 0.0 0.0 7.877552320581021 0.0 14 1.447919773661181E-4 0.0 0.0 8.031900568453302 0.0 15 1.447919773661181E-4 0.0 0.0 8.349863750749298 0.0 16 1.447919773661181E-4 0.0 0.0 8.908326407450415 0.0 17 1.447919773661181E-4 0.0 0.0 9.54338402017821 0.0 18 1.447919773661181E-4 0.0 0.0 10.233462584305128 0.0 19 1.447919773661181E-4 0.0 0.0 10.703167758880817 0.0 20 1.447919773661181E-4 0.0 0.0 11.168818758090252 0.0 21 1.447919773661181E-4 0.0 0.0 11.699191771182342 0.0 22 1.447919773661181E-4 0.0 0.0 12.207411611737417 0.0 23 1.447919773661181E-4 0.0 0.0 12.720843963477671 0.0 24 1.447919773661181E-4 0.0 0.0 13.158115735123348 0.0 25 1.447919773661181E-4 0.0 0.0 13.585686444285495 0.0 26 1.447919773661181E-4 0.0 0.0 13.954182026682265 0.0 27 1.447919773661181E-4 0.0 0.0 14.31355571450497 0.0 28 1.447919773661181E-4 0.0 0.0 14.693200279158932 0.0 29 1.447919773661181E-4 0.0 0.0 15.0625646134199 0.0 30 1.447919773661181E-4 0.0 0.0 15.491438450378341 0.0 31 2.895839547322362E-4 0.0 0.0 15.902358082143385 0.0 32 2.895839547322362E-4 0.0 0.0 16.291124541371413 0.0 33 2.895839547322362E-4 0.0 0.0 16.73317444827017 0.0 34 2.895839547322362E-4 0.0 0.0 17.16060036545495 0.0 35 2.895839547322362E-4 0.0 0.0 17.568479365695307 0.0 36 2.895839547322362E-4 0.0 0.0 17.983163588871868 0.0 37 2.895839547322362E-4 0.0 0.0 18.390608213180123 0.0 38 2.895839547322362E-4 0.0 0.0 18.89433950243685 0.0 39 2.895839547322362E-4 0.0 0.0 19.437164625582426 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 25 3.889182E-5 45.000004 1 CCTGTCG 25 3.889182E-5 45.000004 39 ACGATAG 30 2.164239E-6 45.000004 1 TATACGG 50 2.1827873E-11 45.000004 2 TCGGCAT 20 7.031329E-4 45.0 32 TGTTACG 20 7.031329E-4 45.0 1 GTATACG 40 6.8084773E-9 45.0 1 GCCACGC 20 7.031329E-4 45.0 11 GTGCGAA 20 7.031329E-4 45.0 34 CGAAGTA 20 7.031329E-4 45.0 19 TACGGGT 60 3.6379788E-12 41.250004 4 TAAGCGG 80 0.0 39.375 2 TACGTGT 40 3.4555524E-7 39.375 33 CACGACC 195 0.0 39.23077 27 CGTTTTT 960 0.0 39.14063 1 ACAACGA 295 0.0 38.898304 13 CACAACG 295 0.0 38.898304 12 CATACGA 145 0.0 38.793102 18 GCGAATG 35 6.244667E-6 38.571426 1 TAGTAAC 35 6.244667E-6 38.571426 11 >>END_MODULE