SRR3551739_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551739_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	600872
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGC	2470	0.4110692460291044	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCG	2414	0.40174945745516516	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTC	2170	0.36114180724014433	No Hit
GCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	1964	0.32685829927172505	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1733	0.28841417140422587	No Hit
CCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	1196	0.19904405597198738	No Hit
CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGCT	920	0.15311081228614412	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	30	2.163766E-6	45.000004	31
AACCGTC	20	7.0305966E-4	45.0	39
CGACGTT	25	3.8885755E-5	45.0	27
TTAGCCG	20	7.0305966E-4	45.0	1
AACCCGA	25	3.8885755E-5	45.0	24
TCGATTG	20	7.0305966E-4	45.0	1
CGTTCTA	20	7.0305966E-4	45.0	23
TACGAAT	90	0.0	45.0	12
AGTTACG	25	3.8885755E-5	45.0	1
TATAGCG	25	3.8885755E-5	45.0	1
ATAACGG	45	3.8380676E-10	45.0	2
CACGTCA	25	3.8885755E-5	45.0	34
TCAACCG	20	7.0305966E-4	45.0	37
ACGAATG	20	7.0305966E-4	45.0	1
ACACGAC	125	0.0	43.2	26
AAACACG	120	0.0	43.125004	40
CGTTTTT	930	0.0	40.64516	1
CGAATAT	100	0.0	40.5	14
AACGACG	50	1.0804797E-9	40.5	13
CACGACC	135	0.0	40.000004	27