##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551736_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 323079 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26431306274936 31.0 31.0 33.0 28.0 34.0 2 31.198691341746137 31.0 31.0 34.0 28.0 34.0 3 31.10829549429087 31.0 31.0 34.0 28.0 34.0 4 34.97539920576701 35.0 35.0 37.0 32.0 37.0 5 35.23674395426506 35.0 35.0 37.0 33.0 37.0 6 35.16249895536386 36.0 35.0 37.0 33.0 37.0 7 35.40898975173255 36.0 35.0 37.0 33.0 37.0 8 34.735850983815105 36.0 35.0 37.0 32.0 37.0 9 36.539403675262086 39.0 35.0 39.0 32.0 39.0 10 36.33116977581334 37.0 35.0 39.0 32.0 39.0 11 36.694480297388566 38.0 35.0 39.0 32.0 39.0 12 36.77480740004766 39.0 35.0 39.0 33.0 39.0 13 36.674513044797095 39.0 35.0 39.0 32.0 39.0 14 37.75601633037121 39.0 37.0 41.0 33.0 41.0 15 37.64912916036016 40.0 36.0 41.0 32.0 41.0 16 37.93623540991522 39.0 37.0 41.0 33.0 41.0 17 37.58013674673996 39.0 36.0 41.0 32.0 41.0 18 37.5506083651367 39.0 36.0 40.0 32.0 41.0 19 37.49112136660074 39.0 36.0 40.0 32.0 41.0 20 37.13370723569158 39.0 35.0 40.0 31.0 41.0 21 37.26216807653856 39.0 35.0 40.0 32.0 41.0 22 37.35590985486522 39.0 35.0 41.0 32.0 41.0 23 37.29712547086007 39.0 35.0 41.0 32.0 41.0 24 37.165925361908386 39.0 35.0 41.0 32.0 41.0 25 37.00900089451806 39.0 35.0 40.0 32.0 41.0 26 37.028828862290645 39.0 35.0 40.0 31.0 41.0 27 36.98309082298756 39.0 35.0 41.0 31.0 41.0 28 36.80587100987684 39.0 35.0 41.0 31.0 41.0 29 36.945771777181434 39.0 35.0 41.0 31.0 41.0 30 36.62900714685882 39.0 35.0 41.0 30.0 41.0 31 36.544758402743604 39.0 35.0 40.0 30.0 41.0 32 36.24775674061143 39.0 35.0 40.0 30.0 41.0 33 36.044933282571755 39.0 35.0 41.0 28.0 41.0 34 35.922650497246806 39.0 35.0 41.0 27.0 41.0 35 35.815664280253436 39.0 35.0 41.0 27.0 41.0 36 35.703168574868684 39.0 35.0 41.0 26.0 41.0 37 35.70093382733016 39.0 35.0 41.0 26.0 41.0 38 35.38453443275484 39.0 35.0 40.0 24.0 41.0 39 35.37035214297432 38.0 35.0 40.0 25.0 41.0 40 35.34467730802683 38.0 35.0 40.0 25.0 41.0 41 35.09774699067411 38.0 34.0 40.0 24.0 41.0 42 35.16456346590153 38.0 35.0 40.0 24.0 41.0 43 35.20843199341338 38.0 35.0 40.0 24.0 41.0 44 35.40014361812436 39.0 35.0 40.0 25.0 41.0 45 35.306547315052974 39.0 35.0 40.0 24.0 41.0 46 35.2399134576992 38.0 35.0 40.0 24.0 41.0 47 34.71710943762981 38.0 34.0 40.0 23.0 41.0 48 34.809433606022054 38.0 34.0 40.0 23.0 41.0 49 35.01051755143479 38.0 34.0 40.0 24.0 41.0 50 34.92376168057967 38.0 34.0 40.0 24.0 41.0 51 33.993082187328795 37.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 8.0 10 19.0 11 9.0 12 10.0 13 17.0 14 18.0 15 15.0 16 28.0 17 61.0 18 115.0 19 237.0 20 532.0 21 1207.0 22 2085.0 23 2928.0 24 3672.0 25 4301.0 26 5019.0 27 5025.0 28 4899.0 29 5142.0 30 6249.0 31 7845.0 32 9802.0 33 13299.0 34 20871.0 35 24055.0 36 27384.0 37 40915.0 38 69705.0 39 67595.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.76776887386676 14.797000114523073 15.605471107685737 18.82975990392443 2 27.112563800185097 37.92570857282584 18.992258859288285 15.969468767700778 3 24.918673141863135 37.048523735680746 25.04433900067785 12.988464121778264 4 23.91767957682177 19.77968236870858 40.962736668121416 15.339901386348231 5 34.163780375697584 22.270404452161856 24.705412608061806 18.860402564078754 6 21.079054967979967 39.93667183568106 25.913166748689946 13.071106447649028 7 62.39588459788473 5.2869422029906 26.740828094676534 5.576345104448138 8 59.511450759721306 17.514911213666007 15.901064445538088 7.072573581074598 9 54.93424208939609 7.093621064816964 15.608256804063403 22.36388004172354 10 39.05391560578063 21.96893019973443 23.218779307847306 15.758374886637633 11 32.840884118125906 20.577320098180323 27.740893094258677 18.84090268943509 12 24.982434636729717 18.199263957112656 30.980038937844924 25.838262468312706 13 25.66462072743818 19.943419411351403 37.310069673361625 17.081890187848792 14 19.687754388245597 29.829546333868805 27.57777509525534 22.904924182630253 15 15.592780713076367 22.664425728691747 39.93512422658235 21.807669331649535 16 17.591672624961696 25.02979147515004 28.48560259255476 28.8929333073335 17 17.967122592307145 27.50379938033732 32.799098672460914 21.729979354894624 18 17.444340238765133 25.126671804728872 31.21527552084784 26.213712435658152 19 18.403238836321766 25.588478359781973 28.67843468625321 27.329848117643053 20 23.308231113752363 24.97841085307309 35.009703509048876 16.703654524125678 21 21.114959499069887 31.923770966234265 29.289121236601574 17.672148298094275 22 18.79168872009632 21.240625357884603 33.86602038510705 26.101665536912023 23 21.631241894397345 28.357151037362378 31.12984749859941 18.881759569640863 24 22.326737423354658 24.405176442913344 27.71798847959787 25.55009765413413 25 17.56226805208633 34.752181355024625 26.136331980722982 21.549218612166065 26 18.26859684473457 22.891924266201148 33.673497813228344 25.16598107583594 27 24.4398428867243 26.02490412561633 26.391377960189306 23.143875027470063 28 15.830802992456952 27.951677453502082 33.65956933134001 22.55795022270095 29 20.2424174892209 22.43135579842701 33.29495262768549 24.0312740846666 30 17.473435289820756 28.732601004707824 29.35969221150245 24.434271493968968 31 21.106911931756628 26.645185852376663 24.459342761367964 27.788559454498746 32 25.004101164111564 31.029871950823175 24.047988262932595 19.918038622132666 33 20.278941063950302 24.55003265455198 23.096208667229998 32.07481761426772 34 22.031763129141787 23.70070478118355 27.733464570584903 26.53406751908976 35 24.030964562846858 23.3716830867992 23.762609145131684 28.834743205222253 36 18.27293015021094 32.95509766961022 26.43502053677274 22.336951643406103 37 18.412524490913988 27.56384661336701 28.472602676125653 25.551026219593346 38 19.34511373379266 29.015503947950812 22.688877952451257 28.95050436580527 39 21.006317340340907 28.966289978612043 25.719715611352022 24.30767706969503 40 22.750163272759913 21.272506105317895 28.502007249001014 27.475323372921174 41 18.457095632956648 28.605697058614147 24.502675816131656 28.43453149229755 42 24.335224511651948 23.766632928788315 30.202520126656328 21.69562243290341 43 22.437546234821824 28.58031626939541 24.379176610055126 24.60296088572764 44 21.37991017676791 22.765329841927205 28.826386116089253 27.028373865215627 45 20.329393120568035 21.518575952011737 26.745780443792384 31.406250483627847 46 26.639923981441072 27.348109905007757 24.852435472438632 21.159530641112546 47 17.08127114420931 23.688323908393922 36.54028890766654 22.69011603973022 48 20.71722396070311 25.20714747786145 26.3700209546272 27.70560760680824 49 20.40986879370061 20.945960585491473 35.055512738370496 23.58865788243742 50 21.463171546278154 22.215309568248014 30.206853432132696 26.114665453341136 51 19.521541171044852 20.752199926333805 27.39608578706756 32.33017311555378 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 48.0 1 241.5 2 435.0 3 2804.0 4 5173.0 5 3557.5 6 1942.0 7 1832.5 8 1723.0 9 1679.0 10 1635.0 11 1555.5 12 1476.0 13 1471.5 14 1467.0 15 1381.5 16 1296.0 17 1265.5 18 1235.0 19 1203.5 20 1172.0 21 1209.5 22 1247.0 23 1219.0 24 1191.0 25 1342.5 26 1830.0 27 2166.0 28 2629.0 29 3092.0 30 3449.5 31 3807.0 32 4317.0 33 4827.0 34 5481.0 35 6135.0 36 6772.5 37 7410.0 38 8022.5 39 8635.0 40 9879.5 41 11124.0 42 11922.5 43 12721.0 44 14753.5 45 16786.0 46 40211.0 47 63636.0 48 46992.5 49 30349.0 50 30015.5 51 29682.0 52 25776.5 53 21871.0 54 19658.5 55 17446.0 56 15568.5 57 13691.0 58 12484.0 59 11277.0 60 10691.0 61 10105.0 62 9016.0 63 7927.0 64 6844.5 65 5762.0 66 4831.5 67 3901.0 68 3345.5 69 2790.0 70 2347.0 71 1904.0 72 1717.5 73 1531.0 74 1296.5 75 983.5 76 905.0 77 701.5 78 498.0 79 362.5 80 227.0 81 191.0 82 155.0 83 111.0 84 67.0 85 56.5 86 46.0 87 25.0 88 4.0 89 4.0 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 323079.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.51692804703882 #Duplication Level Percentage of deduplicated Percentage of total 1 74.29596833678661 27.87356498276298 2 9.110767823943148 6.836160418083029 3 3.6764323796715055 4.137853471738187 4 2.329256712465044 3.49546225938533 5 1.7552140999058872 3.292512054665859 6 1.5070933876698334 3.3924908511226275 7 1.2191149365461622 3.2016213148830865 8 1.028035756524065 3.0854994805837173 9 0.8915661611447809 3.010394116515903 >10 4.102190841869924 22.361032994586147 >50 0.04962327263120628 1.253553250834128 >100 0.022330472684042826 1.680506041217237 >500 0.00413527271926719 1.0351122883125374 >1k 0.005789381806974065 5.276714500912173 >5k 0.0 0.0 >10k+ 0.002481163631560314 10.067521974397058 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGC 11398 3.5279297014043003 No Hit GAATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTC 11015 3.409382844443619 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCG 10033 3.105432417458269 No Hit GCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC 3395 1.0508265780196173 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3003 0.9294940246812698 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCT 2345 0.7258286672919007 No Hit GAACTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCT 2310 0.7149954036009768 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCAACCGAT 2100 0.6499958214554336 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCAACCGATCGTA 1985 0.614400812185255 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTC 1868 0.5781867592755952 No Hit CCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGC 728 0.22533188477121693 No Hit CTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTTCTGCT 703 0.2175938392776999 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATG 685 0.2120224465223676 No Hit GAATGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCCGTCTT 668 0.206760575586776 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATCGAATGC 552 0.17085604449685682 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCAACCGATCGT 484 0.1498085607544904 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTCAACCGA 454 0.14052290616226992 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCAACCGATCGTAT 434 0.13433246976745625 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCAACCGATCGTATGCC 365 0.11297546420534915 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2225461883935508 0.0 2 0.0 0.0 0.0 1.716608012281826 0.0 3 0.0 0.0 0.0 2.080296150477128 0.0 4 0.0 0.0 0.0 3.2078841397924345 0.0 5 0.0 0.0 0.0 7.768378631851652 0.0 6 0.0 0.0 0.0 8.670634736395742 0.0 7 0.0 0.0 0.0 10.035316439632412 0.0 8 0.0 0.0 0.0 11.534640134456279 0.0 9 0.0 0.0 0.0 11.92061384367291 0.0 10 0.0 0.0 0.0 15.871350350842983 0.0 11 0.0 0.0 0.0 16.99553360014114 0.0 12 0.0 0.0 0.0 21.62845619801968 0.0 13 0.0 0.0 0.0 22.275666323097447 0.0 14 0.0 0.0 0.0 22.6077832356792 0.0 15 0.0 0.0 0.0 23.552134307708023 0.0 16 0.0 0.0 0.0 24.247939358485077 0.0 17 0.0 0.0 0.0 24.93043497101328 0.0 18 0.0 0.0 0.0 25.552883350511795 0.0 19 0.0 0.0 0.0 26.77394692938879 0.0 20 0.0 0.0 0.0 27.39206200341093 0.0 21 0.0 0.0 0.0 27.94146323345064 0.0 22 0.0 0.0 0.0 28.640982546064585 0.0 23 0.0 0.0 0.0 29.217621696241476 0.0 24 0.0 0.0 0.0 29.689023427706537 0.0 25 0.0 0.0 0.0 30.1170921044079 0.0 26 0.0 0.0 0.0 30.512041946397012 0.0 27 0.0 0.0 0.0 30.961777150480223 0.0 28 0.0 0.0 0.0 31.35889364520752 0.0 29 0.0 0.0 0.0 31.72629604523971 0.0 30 0.0 0.0 0.0 32.162412289254334 0.0 31 0.0 0.0 0.0 32.580885789543736 0.0 32 0.0 0.0 0.0 32.975835631532846 0.0 33 0.0 0.0 0.0 33.34695229340193 0.0 34 0.0 0.0 0.0 33.75799727001755 0.0 35 0.0 0.0 0.0 34.14892332835003 0.0 36 0.0 0.0 0.0 34.55842069586696 0.0 37 0.0 0.0 0.0 34.97967989253402 0.0 38 0.0 0.0 0.0 35.39536769644576 0.0 39 0.0 0.0 0.0 35.832722027739344 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAT 20 7.0257485E-4 45.000004 6 ACCGAAC 35 1.2083001E-7 45.000004 42 CGACAGG 40 6.7884685E-9 45.000004 2 ACGGACG 20 7.0257485E-4 45.000004 43 GACGTAG 25 3.8845596E-5 45.0 1 TAGTTGG 25 3.8845596E-5 45.0 2 CACGTGA 25 3.8845596E-5 45.0 43 TCGAATA 25 3.8845596E-5 45.0 44 AACACGT 25 3.8845596E-5 45.0 41 ATTAGTC 30 2.1606393E-6 44.999996 31 TACGGCT 1255 0.0 44.46215 7 CGATGAA 845 0.0 43.136093 19 GATACCT 1065 0.0 42.88732 5 ACGGCTG 1305 0.0 42.758617 8 CGTTTTT 1705 0.0 42.7566 1 ATACCTG 1095 0.0 41.91781 6 ATGAATG 910 0.0 41.785713 21 CGGCTGT 1330 0.0 41.785713 9 TGATACC 1100 0.0 41.727272 4 GATGAAT 915 0.0 41.557377 20 >>END_MODULE