SRR3551731_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551731_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	553774
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	16743	3.023435553131783	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	15692	2.833646939003998	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	13269	2.39610382574841	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	4906	0.8859209713709925	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4703	0.8492634179286135	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCT	3594	0.6490012171030058	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGTACCGT	3178	0.5738803194082784	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTA	3132	0.5655736816824192	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTC	2856	0.5157338553272635	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	2761	0.49857884263255403	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	1368	0.24703218280381528	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	1032	0.1863576115888431	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATG	882	0.15927074943930197	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTT	748	0.13507315258571187	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGT	731	0.13200330820876388	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTAT	700	0.12640535669785868	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	647	0.11683466540502081	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAAGTACCG	594	0.10726397411218296	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCG	45	3.8380676E-10	45.000004	4
GATTGCG	45	3.8380676E-10	45.000004	1
CTCACGT	20	7.030118E-4	45.0	45
GGTACGA	20	7.030118E-4	45.0	8
AGATCGC	20	7.030118E-4	45.0	29
CGACGGT	20	7.030118E-4	45.0	28
TTTCGCG	25	3.8881783E-5	45.0	1
TAACGCC	25	3.8881783E-5	45.0	12
TCGAATA	20	7.030118E-4	45.0	44
ATACCGG	20	7.030118E-4	45.0	2
CGTTTTT	2650	0.0	43.556606	1
TACGGCT	1860	0.0	43.306454	7
ACGGCTG	1875	0.0	42.960003	8
CGGCTGT	1900	0.0	42.631577	9
CGATGAA	1110	0.0	42.567566	19
GTCGAAT	155	0.0	42.096775	43
CGCGCAA	65	0.0	41.53846	41
TGATACC	1775	0.0	41.450703	4
GATACCT	1775	0.0	41.450703	5
CCGATGA	1125	0.0	41.4	18