SRR3551730_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551730_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	408841
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	10789	2.6389231999726053	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	10245	2.505864137892237	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	9135	2.2343649487208963	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	3554	0.8692865930765261	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3075	0.7521261321638485	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT	2443	0.5975428100410674	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGTCGAT	1945	0.4757350657101416	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTA	1849	0.4522540547547824	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTC	1715	0.4194784769629269	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT	1685	0.41214066103937713	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	894	0.2186669145217823	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	852	0.20839397222881267	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATG	508	0.12425368297210897	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGT	479	0.11716046091267754	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCC	434	0.10615373702735292	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTAT	428	0.10468617384264299	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTT	413	0.10101726588086811	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCC	20	7.027948E-4	45.0	34
CCGATCG	145	0.0	45.0	40
GCGAACC	20	7.027948E-4	45.0	33
GCGCGAC	35	1.2093551E-7	45.0	9
CGACAAA	25	3.886381E-5	45.0	12
CTACGAT	25	3.886381E-5	45.0	41
CGAATGT	20	7.027948E-4	45.0	45
GCGATCA	25	3.886381E-5	45.0	33
TATAGCG	20	7.027948E-4	45.0	1
CAATACC	25	3.886381E-5	45.0	17
CTAGCGG	20	7.027948E-4	45.0	2
GCGAATG	30	2.162058E-6	44.999996	1
TTATGCG	30	2.162058E-6	44.999996	1
TTGCGTC	30	2.162058E-6	44.999996	16
CGATCGA	125	0.0	44.999996	41
TACGGCT	1190	0.0	43.487396	7
CGTTTTT	2170	0.0	43.444702	1
GATCGAA	130	0.0	43.269234	42
GATACCT	1115	0.0	42.78027	5
TGATACC	1110	0.0	42.77027	4