##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551730_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 408841 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.3068405565978 31.0 31.0 33.0 28.0 34.0 2 31.264083103211274 31.0 31.0 34.0 28.0 34.0 3 31.161500436600047 31.0 31.0 34.0 28.0 34.0 4 34.97457935970218 35.0 35.0 37.0 32.0 37.0 5 35.29272749063817 35.0 35.0 37.0 33.0 37.0 6 35.22315521192835 36.0 35.0 37.0 33.0 37.0 7 35.48690811342307 37.0 35.0 37.0 33.0 37.0 8 34.92180089570273 37.0 35.0 37.0 32.0 37.0 9 36.75616682279908 39.0 37.0 39.0 32.0 39.0 10 36.44132804684462 37.0 35.0 39.0 32.0 39.0 11 36.682986784593524 38.0 35.0 39.0 32.0 39.0 12 36.702057768178825 39.0 35.0 39.0 33.0 39.0 13 36.626916087183034 39.0 35.0 39.0 32.0 39.0 14 37.63852206603545 39.0 36.0 41.0 33.0 41.0 15 37.62955036309959 39.0 36.0 41.0 32.0 41.0 16 37.82073715698768 39.0 36.0 41.0 33.0 41.0 17 37.47942843305833 39.0 36.0 41.0 32.0 41.0 18 37.460450395141386 39.0 36.0 40.0 32.0 41.0 19 37.402672432559356 39.0 36.0 40.0 32.0 41.0 20 37.19029402628406 39.0 35.0 40.0 32.0 41.0 21 37.19535956520995 39.0 35.0 40.0 32.0 41.0 22 37.310147465640675 39.0 35.0 41.0 32.0 41.0 23 37.312314567276765 39.0 35.0 41.0 32.0 41.0 24 37.19027445877493 39.0 35.0 41.0 32.0 41.0 25 36.97676847478604 39.0 35.0 40.0 32.0 41.0 26 37.05935559300559 39.0 35.0 40.0 32.0 41.0 27 37.07960796495459 39.0 35.0 41.0 32.0 41.0 28 36.930985395300375 39.0 35.0 41.0 31.0 41.0 29 37.005195173673876 39.0 35.0 41.0 32.0 41.0 30 36.6696759865082 39.0 35.0 41.0 31.0 41.0 31 36.69449492590029 39.0 35.0 40.0 31.0 41.0 32 36.45307589013822 39.0 35.0 40.0 30.0 41.0 33 36.23613091641983 39.0 35.0 41.0 30.0 41.0 34 36.1433711393916 39.0 35.0 41.0 30.0 41.0 35 36.00345611129999 39.0 35.0 41.0 29.0 41.0 36 35.88236258105229 39.0 35.0 41.0 28.0 41.0 37 35.839986694093795 39.0 35.0 41.0 28.0 41.0 38 35.64044212786878 39.0 35.0 41.0 26.0 41.0 39 35.597895025205396 39.0 35.0 40.0 27.0 41.0 40 35.49224759747677 39.0 35.0 40.0 26.0 41.0 41 35.3965991669133 38.0 35.0 40.0 25.0 41.0 42 35.46777598137173 39.0 35.0 40.0 26.0 41.0 43 35.52586947003847 39.0 35.0 40.0 27.0 41.0 44 35.70235372675441 39.0 35.0 41.0 27.0 41.0 45 35.6285475282567 39.0 35.0 40.0 27.0 41.0 46 35.49456634730861 38.0 35.0 40.0 26.0 41.0 47 35.215071384719245 38.0 35.0 40.0 25.0 41.0 48 35.21479499365279 38.0 35.0 40.0 25.0 41.0 49 35.371078243131194 38.0 35.0 40.0 26.0 41.0 50 35.2694715060378 38.0 35.0 40.0 26.0 41.0 51 34.42696060326631 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 20.0 10 19.0 11 21.0 12 10.0 13 11.0 14 18.0 15 18.0 16 34.0 17 65.0 18 130.0 19 298.0 20 659.0 21 1349.0 22 2202.0 23 2804.0 24 3584.0 25 4733.0 26 5628.0 27 5999.0 28 6408.0 29 6735.0 30 7723.0 31 9619.0 32 12520.0 33 17561.0 34 31430.0 35 31839.0 36 30946.0 37 47500.0 38 86282.0 39 92663.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 49.17266125461977 15.320625866779505 17.58458667305872 17.922126205542007 2 29.83458116969678 33.20777514975259 20.877553865683726 16.080089814866906 3 27.36198179732463 31.971597760498582 26.527672126817027 14.138748315359761 4 25.038829275928787 20.45171594825372 37.59603366589946 16.913421109918037 5 32.3389777444043 23.536289168649915 25.271438040705313 18.85329504624047 6 22.638140499607427 37.49770693252389 26.633092082252023 13.231060485616657 7 65.80969129808409 5.635931817014439 23.19581450979721 5.358562375104258 8 64.23255006224913 14.276454660858379 15.039342923043433 6.451652353849051 9 59.34458628170853 6.780631101088199 15.729831401449463 18.144951215753803 10 42.23646845595231 19.259810048405125 23.13515523149586 15.368566264146697 11 33.97824582172532 21.311218786765515 27.09782042407684 17.61271496743233 12 29.032557889252793 18.333043897260794 29.87542834500454 22.75896986848188 13 26.242231087390945 19.49266340704577 35.682820460765925 18.582285044797366 14 20.641031599081305 27.246288899596667 29.345638035324246 22.767041465997785 15 18.21221452838634 22.42730058873743 39.312593404281856 20.04789147859437 16 21.609134113261636 23.567352589392943 29.3116394882118 25.511873809133622 17 20.47397398988849 25.82030667178683 33.12608079913708 20.579638539187606 18 20.472017238975543 24.136522511196283 32.142324277653174 23.249135972175004 19 21.15247736895272 26.860075188153832 28.89974342103654 23.087704021856908 20 24.414381140834703 25.980760246648455 33.90975953977218 15.69509907274466 21 23.22883468145318 30.23962860867672 29.240218079889246 17.291318629980847 22 20.00386458305307 22.297176653026483 34.17123038051467 23.527728383405773 23 22.508994939352952 26.820940169894897 32.202249774362166 18.46781511638999 24 24.61910620510174 22.255595696126367 28.803618032438038 24.321680066333855 25 19.539136241228253 30.957756193728127 27.155789169872886 22.34731839517074 26 18.51917982785484 22.836750717271507 32.9849501395408 25.659119315332855 27 22.369331842941385 24.702512712766087 29.85439327269036 23.073762171602162 28 16.361617352467096 25.856995751404583 34.49213753023791 23.289249365890406 29 23.07669729797158 22.257552447039313 30.772354044726434 23.89339621026267 30 20.422364684559525 25.976846744822556 35.21393402325109 18.386854547366823 31 23.60697679538011 21.12801798254089 30.133964059377604 25.131041162701393 32 30.205630061564275 23.965551400177574 27.158235108514067 18.67058342974408 33 22.71347540975587 22.38205072387554 30.5517303792917 24.352743487076882 34 22.881022206676924 22.02861259022456 28.908059612416565 26.182305590681953 35 23.61700514380896 23.26968185676094 30.224708382965503 22.88860461646459 36 18.85182748305576 28.91980011789424 29.584117052839616 22.644255346210386 37 23.75006420588933 24.17785887423228 32.336531805763116 19.735545114115265 38 21.875986019014725 25.764783864631973 29.917498489632887 22.44173162672041 39 26.02160742195621 24.171499433765202 26.724570187432278 23.082322956846305 40 23.705548122619795 21.117255852519683 31.723090394554358 23.454105630306156 41 19.078810588957566 27.411145164012417 26.099388270745838 27.410655976284175 42 23.207555015274885 23.25402784945737 30.497675135321558 23.040741999946192 43 21.93395476481077 25.409633573932165 26.88844807639156 25.767963584865512 44 21.42299818266759 21.72947429440785 30.729794712369845 26.117732810554717 45 21.351821368209155 20.305204223646843 29.576534643051943 28.766439765092056 46 26.591755719216025 25.055217064824713 26.967941082230013 21.38508613372925 47 17.84899264017063 23.05492844406505 36.865187199913905 22.230891715850415 48 21.327851169525562 23.21880633302433 29.19961549844561 26.2537269990045 49 21.635794844450533 19.5851198876825 35.50206559518248 23.27701967268449 50 21.5032249700984 20.996181889781113 31.53059502349324 25.969998116627245 51 19.8067219285737 19.830936721121414 29.847055456766814 30.515285893538074 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 108.0 1 322.0 2 536.0 3 3697.5 4 6859.0 5 4588.0 6 2317.0 7 2279.5 8 2242.0 9 2165.0 10 2088.0 11 2079.0 12 2070.0 13 1968.0 14 1866.0 15 1728.0 16 1590.0 17 1525.5 18 1461.0 19 1387.0 20 1313.0 21 1530.5 22 1748.0 23 1703.0 24 1658.0 25 1971.5 26 2443.0 27 2601.0 28 3258.5 29 3916.0 30 4154.0 31 4392.0 32 5384.5 33 6377.0 34 7321.5 35 8266.0 36 8896.5 37 9527.0 38 10313.5 39 11100.0 40 12806.0 41 14512.0 42 15573.0 43 16634.0 44 18894.5 45 21155.0 46 43638.0 47 66121.0 48 51290.5 49 36460.0 50 37057.0 51 37654.0 52 32892.0 53 28130.0 54 25426.0 55 22722.0 56 21281.0 57 19840.0 58 19009.0 59 18178.0 60 17352.0 61 16526.0 62 14980.0 63 13434.0 64 11329.5 65 9225.0 66 7146.0 67 5067.0 68 4129.0 69 3191.0 70 2725.5 71 2260.0 72 1807.0 73 1354.0 74 1184.5 75 754.5 76 494.0 77 399.0 78 304.0 79 219.0 80 134.0 81 99.0 82 64.0 83 41.0 84 18.0 85 12.0 86 6.0 87 12.5 88 19.0 89 10.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 408841.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.35058538764001 #Duplication Level Percentage of deduplicated Percentage of total 1 74.25146252941465 26.248326663032252 2 8.601045037458729 6.081039540392443 3 3.184864147301659 3.377604359616617 4 1.9118067223287516 2.7033394712938685 5 1.5000119303628803 2.651314991338586 6 1.274489419461019 2.70323682289803 7 1.1710237958345262 2.8977463679924718 8 1.0174310623359 2.877342691611401 9 0.922796075166793 2.9359243305506504 >10 6.077038096265505 32.50686444196701 >50 0.05475955544486952 1.346961458982942 >100 0.024260562538866243 1.7397537490956683 >500 0.002079476789045678 0.5523105564030473 >1k 0.004852112507773248 3.985751335604245 >5k 6.931589296818926E-4 2.23840147858999 >10k+ 0.0013863178593637852 5.154081740630744 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC 10789 2.6389231999726053 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG 10245 2.505864137892237 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC 9135 2.2343649487208963 No Hit GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC 3554 0.8692865930765261 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3075 0.7521261321638485 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT 2443 0.5975428100410674 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGTCGAT 1945 0.4757350657101416 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTA 1849 0.4522540547547824 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTC 1715 0.4194784769629269 No Hit GAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT 1685 0.41214066103937713 No Hit CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT 894 0.2186669145217823 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC 852 0.20839397222881267 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATG 508 0.12425368297210897 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGT 479 0.11716046091267754 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCC 434 0.10615373702735292 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTAT 428 0.10468617384264299 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTT 413 0.10101726588086811 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.22576013658121372 0.0 2 0.0 0.0 0.0 1.507187390697117 0.0 3 0.0 0.0 0.0 1.825893195643294 0.0 4 0.0 0.0 0.0 2.6496853299938117 0.0 5 0.0 0.0 0.0 5.934091737374676 0.0 6 0.0 0.0 0.0 6.672031425419662 0.0 7 0.0 0.0 0.0 7.876656206202411 0.0 8 0.0 0.0 0.0 9.143163234607096 0.0 9 0.0 0.0 0.0 9.483148705731567 0.0 10 0.0 0.0 0.0 12.806690131371365 0.0 11 0.0 0.0 0.0 13.992236590752885 0.0 12 0.0 0.0 0.0 17.61222577970409 0.0 13 0.0 0.0 0.0 18.079644654034208 0.0 14 0.0 0.0 0.0 18.36312894254735 0.0 15 0.0 0.0 0.0 19.134088802248307 0.0 16 0.0 0.0 0.0 19.79033413967777 0.0 17 0.0 0.0 0.0 20.421875496831287 0.0 18 0.0 0.0 0.0 21.061733045364825 0.0 19 0.0 0.0 0.0 22.101990749460057 0.0 20 0.0 0.0 0.0 22.655995851688065 0.0 21 0.0 0.0 0.0 23.24033059306674 0.0 22 0.0 0.0 0.0 23.88923811457266 0.0 23 0.0 0.0 0.0 24.43027974200239 0.0 24 0.0 0.0 0.0 24.90674858930489 0.0 25 0.0 0.0 0.0 25.35190942200024 0.0 26 0.0 0.0 0.0 25.74032447822014 0.0 27 0.0 0.0 0.0 26.186219092507844 0.0 28 0.0 0.0 0.0 26.58955437443896 0.0 29 0.0 0.0 0.0 26.998270721380685 0.0 30 0.0 0.0 0.0 27.440741021570734 0.0 31 2.445938641183247E-4 0.0 0.0 27.861197873990132 0.0 32 2.445938641183247E-4 0.0 0.0 28.255483182948872 0.0 33 2.445938641183247E-4 0.0 0.0 28.686946759253598 0.0 34 2.445938641183247E-4 0.0 0.0 29.11131711349889 0.0 35 2.445938641183247E-4 0.0 0.0 29.5305509965977 0.0 36 2.445938641183247E-4 0.0 0.0 29.947828128783563 0.0 37 2.445938641183247E-4 0.0 0.0 30.3567890695894 0.0 38 2.445938641183247E-4 0.0 0.0 30.821762005278334 0.0 39 2.445938641183247E-4 0.0 0.0 31.321222675807956 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACCC 20 7.027948E-4 45.0 34 CCGATCG 145 0.0 45.0 40 GCGAACC 20 7.027948E-4 45.0 33 GCGCGAC 35 1.2093551E-7 45.0 9 CGACAAA 25 3.886381E-5 45.0 12 CTACGAT 25 3.886381E-5 45.0 41 CGAATGT 20 7.027948E-4 45.0 45 GCGATCA 25 3.886381E-5 45.0 33 TATAGCG 20 7.027948E-4 45.0 1 CAATACC 25 3.886381E-5 45.0 17 CTAGCGG 20 7.027948E-4 45.0 2 GCGAATG 30 2.162058E-6 44.999996 1 TTATGCG 30 2.162058E-6 44.999996 1 TTGCGTC 30 2.162058E-6 44.999996 16 CGATCGA 125 0.0 44.999996 41 TACGGCT 1190 0.0 43.487396 7 CGTTTTT 2170 0.0 43.444702 1 GATCGAA 130 0.0 43.269234 42 GATACCT 1115 0.0 42.78027 5 TGATACC 1110 0.0 42.77027 4 >>END_MODULE