SRR3551726_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551726_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	419398
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	9771	2.329767905426349	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	8686	2.0710637628219493	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	8587	2.047458500040534	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	3110	0.7415390631333483	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2777	0.6621395428685878	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	2314	0.5517432128908578	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	2217	0.5286148241050268	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTA	1776	0.4234641080787223	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCTGAAT	1712	0.40820414022002965	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTC	1678	0.40009728229509917	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	1143	0.2725334884763399	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	991	0.23629106481194473	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT	649	0.15474561156705566	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCC	512	0.12207974286954158	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATG	500	0.1192184988960367	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	430	0.10252790905059157	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGT	423	0.10085885006604704	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	25	3.886554E-5	45.0	25
AACCGTA	20	7.028156E-4	45.0	40
TACGCGG	25	3.886554E-5	45.0	2
TCTACGG	20	7.028156E-4	45.0	2
CGGATGG	25	3.886554E-5	45.0	2
CGAATGC	110	0.0	45.0	45
CGTACGA	20	7.028156E-4	45.0	23
GCTACGA	25	3.886554E-5	45.0	10
TTACCGG	20	7.028156E-4	45.0	2
CAATCGA	50	2.1827873E-11	45.0	41
CCGTTAG	20	7.028156E-4	45.0	1
GCGAACC	30	2.1621927E-6	44.999996	33
ATCGAAT	145	0.0	43.448273	43
CCGATGA	1240	0.0	42.64113	18
ACGGGCG	80	0.0	42.1875	5
CGGGAGT	80	0.0	42.1875	6
CGTTTTT	1830	0.0	41.92623	1
CGATGAA	1285	0.0	41.673153	19
CCGATCG	60	3.6379788E-12	41.249996	40
CGATCGA	60	3.6379788E-12	41.249996	41