##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551724_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 770464 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.321135056277775 31.0 31.0 33.0 28.0 34.0 2 31.276286757071063 31.0 31.0 34.0 28.0 34.0 3 31.1543212921045 31.0 31.0 34.0 28.0 34.0 4 34.944676195123975 35.0 35.0 37.0 32.0 37.0 5 35.28707376334261 35.0 35.0 37.0 33.0 37.0 6 35.2186851040412 36.0 35.0 37.0 33.0 37.0 7 35.540674191136766 37.0 35.0 37.0 33.0 37.0 8 35.16209972172613 37.0 35.0 37.0 32.0 37.0 9 37.08262813058105 39.0 37.0 39.0 33.0 39.0 10 36.57532993105453 38.0 35.0 39.0 32.0 39.0 11 36.79461726959339 39.0 37.0 39.0 33.0 39.0 12 36.92949573244175 39.0 37.0 39.0 33.0 39.0 13 36.97825855588321 39.0 37.0 39.0 33.0 39.0 14 38.02630752377788 40.0 37.0 41.0 33.0 41.0 15 38.05301221082361 40.0 37.0 41.0 33.0 41.0 16 38.14119932923537 40.0 37.0 41.0 34.0 41.0 17 37.940785033434395 40.0 37.0 41.0 33.0 41.0 18 37.85571421896416 39.0 37.0 41.0 33.0 41.0 19 37.74894608962911 39.0 37.0 41.0 33.0 41.0 20 37.6567198467417 39.0 36.0 41.0 33.0 41.0 21 37.50865582298459 39.0 36.0 41.0 33.0 41.0 22 37.684952184657554 39.0 36.0 41.0 33.0 41.0 23 37.736798864061136 39.0 36.0 41.0 33.0 41.0 24 37.61288522241143 39.0 36.0 41.0 33.0 41.0 25 37.27369740831499 39.0 35.0 41.0 32.0 41.0 26 37.43060415541803 39.0 35.0 41.0 33.0 41.0 27 37.49621007600615 39.0 36.0 41.0 33.0 41.0 28 37.38557544544586 39.0 35.0 41.0 33.0 41.0 29 37.419740571915106 39.0 35.0 41.0 33.0 41.0 30 37.06199640735972 39.0 35.0 41.0 31.0 41.0 31 37.08216217759688 39.0 35.0 41.0 32.0 41.0 32 36.91948747767579 39.0 35.0 41.0 31.0 41.0 33 36.79555177140009 39.0 35.0 41.0 31.0 41.0 34 36.62760103002866 39.0 35.0 41.0 30.0 41.0 35 36.48912733106284 39.0 35.0 41.0 30.0 41.0 36 36.26427062133987 39.0 35.0 41.0 30.0 41.0 37 36.251088954188646 39.0 35.0 41.0 30.0 41.0 38 36.13065762968808 39.0 35.0 41.0 29.0 41.0 39 36.08762252357021 39.0 35.0 41.0 29.0 41.0 40 36.05644780288242 39.0 35.0 41.0 29.0 41.0 41 35.890820336835986 39.0 35.0 41.0 27.0 41.0 42 36.00865063130789 39.0 35.0 41.0 29.0 41.0 43 36.002585454998545 39.0 35.0 41.0 29.0 41.0 44 36.109431459484156 39.0 35.0 41.0 29.0 41.0 45 36.08322776924035 39.0 35.0 41.0 29.0 41.0 46 35.97822221414628 39.0 35.0 41.0 28.0 41.0 47 35.77098605515637 39.0 35.0 41.0 27.0 41.0 48 35.71826847198571 39.0 35.0 40.0 27.0 41.0 49 35.82873177721477 39.0 35.0 41.0 28.0 41.0 50 35.74300551356066 39.0 35.0 41.0 28.0 41.0 51 34.89354077542883 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 7.0 8 14.0 9 22.0 10 37.0 11 20.0 12 22.0 13 22.0 14 31.0 15 46.0 16 60.0 17 134.0 18 253.0 19 580.0 20 1147.0 21 2047.0 22 2970.0 23 3993.0 24 5433.0 25 7712.0 26 10195.0 27 10840.0 28 10809.0 29 11331.0 30 12880.0 31 15933.0 32 20530.0 33 27913.0 34 45336.0 35 51704.0 36 62153.0 37 96722.0 38 177499.0 39 192049.0 40 20.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.249911741496035 18.55115878224031 20.77228786808988 17.426641608173775 2 32.15646675250239 29.83072538106907 22.56614196120779 15.44666590522075 3 29.132964032063796 28.16510570253769 28.42858329526104 14.273346970137476 4 25.943846824770528 22.744216472151844 34.424061344851935 16.887875358225692 5 28.672202724591934 26.263654109731277 26.917545790588527 18.14659737508826 6 23.960756115795157 35.05290318561283 26.741547950326037 14.244792748265981 7 71.99778315404744 5.093294430369232 18.28339805623624 4.625524359347095 8 72.15625908543423 9.108018025501515 13.346502886572248 5.389220002492005 9 66.1348226523238 7.1063670723096735 14.889728786808988 11.869081488557546 10 36.0791678780579 27.89397038667608 21.94469825974997 14.082163475516051 11 26.32128172114466 22.978620675333307 31.738796361672968 18.961301241849068 12 22.986537982306764 21.160235909789428 34.09010674087303 21.763119367030775 13 23.160459151887693 22.22764464011297 36.770829006936076 17.841067201063254 14 19.81883644141712 27.915126469244505 31.49777277069402 20.76826431864435 15 17.631972421813348 25.63922519416871 37.08025293848902 19.64854944552893 16 20.573057274577398 26.701961415458737 30.576509739585493 22.14847157037837 17 20.911554595672218 27.327688250197284 31.812388378950867 19.94836877517963 18 20.397838185820493 25.905039041408813 31.888316650745523 21.80880612202517 19 20.298028201187858 27.76794243468871 29.941048511027123 21.992980853096316 20 22.839483739668566 27.176610458113554 32.60437866013208 17.379527142085806 21 22.021275491132617 29.10090542841716 31.49530672425967 17.382512356190556 22 20.844971341944593 23.646140507538316 32.83021659675209 22.678671553765003 23 20.798635627362213 27.3269094986917 32.215522075009346 19.658932798936746 24 21.44188437097645 25.548500643767913 31.070887153715166 21.938727831540476 25 19.866210491340283 30.707859160194378 28.829380736802758 20.59654961166258 26 20.70765149312622 26.111278398471573 31.41483573534909 21.76623437305312 27 22.860769614154588 26.206156290235494 30.07135959629522 20.861714499314697 28 19.961737342692196 26.556724259666904 32.4387641732774 21.0427742243635 29 23.36332391909291 23.347878680898784 31.967359928562527 21.32143747144578 30 21.398533870498817 25.935929517797067 33.631162520247535 19.034374091456577 31 24.492643394110562 23.62667171989866 29.420842505295507 22.459842380695267 32 24.485894214395483 25.220516467998504 31.80888399717573 18.484705320430287 33 21.516255139759938 23.1431968268472 32.78271275491132 22.557835278481537 34 23.15215246916144 23.48052602068364 30.921626448477802 22.44569506167712 35 23.259490385014743 23.06441313286539 32.0371879802301 21.63890850188977 36 24.117155376500392 25.196634755160524 31.424050961498523 19.262158906840554 37 20.980733687751794 24.087173443535324 34.810192299705115 20.121900569007767 38 22.573280516675666 24.852426589691408 30.993531170826934 21.580761722805995 39 22.383265149312624 23.65937928313328 32.03589006105412 21.921465506499977 40 22.89282821780122 23.39382501972837 32.392558250612616 21.32078851185779 41 20.839649873323086 24.883187274162065 30.407261079038083 23.869901773476762 42 23.305177140009135 24.01773476762055 31.968398263903307 20.708689828467 43 23.097639863770404 23.421989865847074 31.449490177347677 22.030880093034845 44 22.233874652157663 23.51634858994061 30.931750218050418 23.31802653985131 45 21.993759604601905 22.38534181999419 29.915090127507582 25.705808447896334 46 24.310934709473774 24.590246916144036 29.532074178676744 21.566744195705446 47 19.70280246708477 23.86821447854799 34.79786206753333 21.631120986833906 48 21.75675956306849 23.97905677617643 30.421538189973834 23.842645470781243 49 21.783496698093614 21.794269427254225 34.41938883581842 22.00284503883374 50 21.401389292685966 22.181568509365786 32.7271618141795 23.68988038376874 51 20.89623914939569 21.558697096814385 30.353657017070233 27.191406736719692 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 159.0 1 458.0 2 757.0 3 5744.5 4 10732.0 5 7474.5 6 4217.0 7 4153.0 8 4089.0 9 4062.0 10 4035.0 11 3956.5 12 3878.0 13 3684.5 14 3491.0 15 3413.5 16 3336.0 17 3234.5 18 3133.0 19 3099.5 20 3066.0 21 3317.0 22 3568.0 23 3714.5 24 3861.0 25 4419.5 26 5954.0 27 6930.0 28 8525.5 29 10121.0 30 11634.0 31 13147.0 32 14865.0 33 16583.0 34 19055.5 35 21528.0 36 23573.0 37 25618.0 38 27644.0 39 29670.0 40 33079.0 41 36488.0 42 38481.0 43 40474.0 44 44363.0 45 48252.0 46 77680.0 47 107108.0 48 92007.0 49 76906.0 50 74846.5 51 72787.0 52 61279.5 53 49772.0 54 44361.0 55 38950.0 56 34938.5 57 30927.0 58 27691.5 59 24456.0 60 22323.5 61 20191.0 62 17812.5 63 15434.0 64 13229.0 65 11024.0 66 9104.0 67 7184.0 68 5958.0 69 4732.0 70 3986.0 71 3240.0 72 2719.5 73 2199.0 74 1881.0 75 1245.0 76 927.0 77 694.5 78 462.0 79 346.5 80 231.0 81 201.0 82 171.0 83 114.0 84 57.0 85 41.5 86 26.0 87 16.0 88 6.0 89 3.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 770464.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.50171710105743 #Duplication Level Percentage of deduplicated Percentage of total 1 73.64106674392187 26.88025385306724 2 8.830098026800897 6.446274802977834 3 3.450417841944061 3.778385278412496 4 2.2034839249122338 3.2172378745549617 5 1.613278536845245 2.9443718378566497 6 1.348779045771664 2.953965069635488 7 1.1838978501788622 3.0250013082645233 8 1.0304422306132737 3.009032863266264 9 0.8890971483508487 2.9208215326013613 >10 5.721113705987711 32.45467214217436 >50 0.05601094270054443 1.3918296558101204 >100 0.02441502371285441 1.7135754445900435 >500 0.0025133112645584314 0.63208981791645 >1k 0.0039494891300203925 3.458211491885003 >5k 7.180889327309804E-4 2.0756870280242037 >10k+ 7.180889327309804E-4 3.0985899989630163 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC 13189 1.7118256011961623 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG 10454 1.3568447065664326 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC 9836 1.2766333014910496 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6002 0.7790110894214396 No Hit GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC 4855 0.6301397599368692 No Hit GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT 3909 0.5073566058894381 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT 2565 0.33291626863811935 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTT 2335 0.30306412759064666 No Hit CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC 2249 0.29190202267724386 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT 2130 0.27645678448311667 No Hit CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT 2047 0.26568405532250694 Illumina Single End Adapter 1 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC 1965 0.255041118079495 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA 1702 0.22090584375129793 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCC 1351 0.17534888067450263 No Hit CGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTG 1279 0.16600386260746772 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC 928 0.12044689953067242 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTT 904 0.11733189350832746 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT 794 0.10305478257257965 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2979191759770735E-4 0.0 0.0 0.27645678448311667 0.0 2 1.2979191759770735E-4 0.0 0.0 1.3874755991194916 0.0 3 1.2979191759770735E-4 0.0 0.0 1.8120249615815924 0.0 4 1.2979191759770735E-4 0.0 0.0 2.772355359887029 0.0 5 1.2979191759770735E-4 0.0 0.0 5.630243593470947 0.0 6 1.2979191759770735E-4 0.0 0.0 6.913755866594675 0.0 7 1.2979191759770735E-4 0.0 0.0 8.063452672675167 0.0 8 1.2979191759770735E-4 0.0 0.0 9.405111724882667 0.0 9 1.2979191759770735E-4 0.0 0.0 9.913247082277692 0.0 10 1.2979191759770735E-4 0.0 0.0 12.170588113137018 0.0 11 1.2979191759770735E-4 0.0 0.0 13.403611330315238 0.0 12 1.2979191759770735E-4 0.0 0.0 15.673931552934336 0.0 13 1.2979191759770735E-4 0.0 0.0 16.15766602982099 0.0 14 1.2979191759770735E-4 0.0 0.0 16.40284296216306 0.0 15 1.2979191759770735E-4 0.0 0.0 16.91136769531088 0.0 16 1.2979191759770735E-4 0.0 0.0 17.487254433691906 0.0 17 1.2979191759770735E-4 0.0 0.0 18.184237031191593 0.0 18 1.2979191759770735E-4 0.0 0.0 18.865904182414752 0.0 19 1.2979191759770735E-4 0.0 0.0 19.658283839348755 0.0 20 1.2979191759770735E-4 0.0 0.0 20.170572538106907 0.0 21 1.2979191759770735E-4 0.0 0.0 20.75126157743905 0.0 22 1.2979191759770735E-4 0.0 0.0 21.401519084603564 0.0 23 1.2979191759770735E-4 0.0 0.0 21.99895128130581 0.0 24 1.2979191759770735E-4 0.0 0.0 22.488396602566766 0.0 25 1.2979191759770735E-4 0.0 0.0 22.92527619720065 0.0 26 1.2979191759770735E-4 0.0 0.0 23.353978901025876 0.0 27 1.2979191759770735E-4 0.0 0.0 23.814350832744942 0.0 28 1.2979191759770735E-4 0.0 0.0 24.237212900278273 0.0 29 1.2979191759770735E-4 0.0 0.0 24.6997912945965 0.0 30 1.2979191759770735E-4 0.0 0.0 25.2094841550027 0.0 31 1.2979191759770735E-4 0.0 0.0 25.674009428084894 0.0 32 2.595838351954147E-4 0.0 0.0 26.117897786269054 0.0 33 2.595838351954147E-4 0.0 0.0 26.56139676870042 0.0 34 2.595838351954147E-4 0.0 0.0 27.00242970469743 0.0 35 2.595838351954147E-4 0.0 0.0 27.44099659426008 0.0 36 2.595838351954147E-4 0.0 0.0 27.868660962744528 0.0 37 2.595838351954147E-4 0.0 0.0 28.31358765626947 0.0 38 2.595838351954147E-4 0.0 0.0 28.77136374963658 0.0 39 2.595838351954147E-4 0.0 0.0 29.24834904680816 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 20 7.031836E-4 45.000004 1 TAACGAG 20 7.031836E-4 45.000004 1 CTACCCG 20 7.031836E-4 45.000004 27 TCGTCGA 25 3.8896047E-5 45.0 38 GCGATTC 45 3.8380676E-10 45.0 9 CCGACGA 25 3.8896047E-5 45.0 18 CGTTTTT 4440 0.0 43.277027 1 CCGATCG 85 0.0 42.352943 40 TACGGCT 1170 0.0 41.153847 7 CCGATGA 775 0.0 40.35484 18 CGATCGA 95 0.0 40.263157 41 ACTTGCG 45 1.9268555E-8 40.0 1 TCGAATG 90 0.0 40.0 44 ATCGAAT 85 0.0 39.705883 43 TAGAACG 40 3.4562436E-7 39.375004 1 AAGCGCG 40 3.4562436E-7 39.375004 1 CGGCTGT 1225 0.0 39.306126 9 CGATGAA 800 0.0 39.09375 19 TGATACC 1370 0.0 39.08759 4 ACGGCTG 1240 0.0 38.830643 8 >>END_MODULE