SRR3551722_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551722_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	547927
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCG	5229	0.9543242074217915	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC	5088	0.9285908524310721	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC	4994	0.911435282437259	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2466	0.4500599532419465	No Hit
GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	2075	0.3787000823102348	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT	1157	0.21115951577491163	No Hit
GAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT	1117	0.2038592732243529	No Hit
CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	1106	0.20185170652294923	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTC	891	0.16261290281369598	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTA	876	0.15987531185723647	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATATCGCT	809	0.14764740558505057	No Hit
CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT	732	0.133594438675225	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC	561	0.10238590177158635	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCACG	30	2.1634132E-6	45.000004	1
TACGAAT	35	1.2103737E-7	45.000004	12
TTACGCG	25	3.888124E-5	45.0	1
ACGTAGG	40	6.8030204E-9	45.0	2
GCTACGA	25	3.888124E-5	45.0	10
TCGACGG	20	7.030052E-4	45.0	2
AAGTGCG	20	7.030052E-4	45.0	1
CTTACGA	20	7.030052E-4	45.0	29
CGTAAGG	85	0.0	42.35294	2
TACGGCT	625	0.0	41.039997	7
ATGACGG	55	6.002665E-11	40.90909	2
CGTTTTT	1380	0.0	40.76087	1
GATACCT	605	0.0	40.537193	5
CGATGAA	495	0.0	40.454544	19
CCGATGA	495	0.0	40.0	18
TGATACC	620	0.0	39.556454	4
AAATGCG	40	3.453806E-7	39.375	1
ACGGCTG	660	0.0	38.86364	8
AACGTAG	35	6.242304E-6	38.57143	1
CTCGAAT	35	6.242304E-6	38.57143	43