##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551722_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 547927 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.394311651004603 31.0 31.0 33.0 28.0 34.0 2 31.362599397364978 31.0 31.0 34.0 28.0 34.0 3 31.20746559304433 31.0 31.0 34.0 28.0 34.0 4 35.039129300071 35.0 35.0 37.0 32.0 37.0 5 35.35092995964791 35.0 35.0 37.0 33.0 37.0 6 35.25891040229811 37.0 35.0 37.0 33.0 37.0 7 35.62834647681169 37.0 35.0 37.0 35.0 37.0 8 35.209819921266885 37.0 35.0 37.0 32.0 37.0 9 37.10196796288557 39.0 37.0 39.0 33.0 39.0 10 36.59646084241149 38.0 35.0 39.0 32.0 39.0 11 36.716051590814104 39.0 35.0 39.0 33.0 39.0 12 36.6186152534918 39.0 35.0 39.0 33.0 39.0 13 36.62493361341931 39.0 35.0 39.0 33.0 39.0 14 37.56416091924654 39.0 36.0 41.0 33.0 41.0 15 37.64898973768403 39.0 36.0 41.0 33.0 41.0 16 37.71069686290327 39.0 36.0 41.0 33.0 41.0 17 37.466445347646676 39.0 35.0 41.0 32.0 41.0 18 37.458657813905866 39.0 36.0 41.0 33.0 41.0 19 37.409742538695845 39.0 35.0 41.0 33.0 41.0 20 37.41236697589277 39.0 35.0 41.0 32.0 41.0 21 37.23527769210132 39.0 35.0 41.0 32.0 41.0 22 37.415272472427894 39.0 35.0 41.0 33.0 41.0 23 37.492556490189386 39.0 35.0 41.0 33.0 41.0 24 37.398089526524515 39.0 35.0 41.0 33.0 41.0 25 37.049557696554466 39.0 35.0 41.0 32.0 41.0 26 37.15828933416313 39.0 35.0 41.0 32.0 41.0 27 37.243839051552484 39.0 35.0 41.0 33.0 41.0 28 37.1415352775096 39.0 35.0 41.0 32.0 41.0 29 37.20768825044212 39.0 35.0 41.0 33.0 41.0 30 36.88352097998456 39.0 35.0 41.0 32.0 41.0 31 36.92837914539711 39.0 35.0 41.0 32.0 41.0 32 36.83611137980059 39.0 35.0 41.0 32.0 41.0 33 36.83103588616732 39.0 35.0 41.0 32.0 41.0 34 36.642649477028876 39.0 35.0 41.0 31.0 41.0 35 36.617532992533675 39.0 35.0 41.0 31.0 41.0 36 36.509018537140896 39.0 35.0 41.0 31.0 41.0 37 36.572848207881705 39.0 35.0 41.0 31.0 41.0 38 36.43570767638755 39.0 35.0 41.0 31.0 41.0 39 36.410293707008414 39.0 35.0 41.0 31.0 41.0 40 36.30675984209575 39.0 35.0 41.0 30.0 41.0 41 36.2083854236057 38.0 35.0 40.0 30.0 41.0 42 36.29404281957268 39.0 35.0 41.0 31.0 41.0 43 36.27836372363472 39.0 35.0 41.0 31.0 41.0 44 36.3470553559142 39.0 35.0 41.0 31.0 41.0 45 36.27082257307999 39.0 35.0 41.0 31.0 41.0 46 36.14829347705078 38.0 35.0 40.0 31.0 41.0 47 35.9478707930071 38.0 35.0 40.0 30.0 41.0 48 35.90475373544286 38.0 35.0 40.0 30.0 41.0 49 36.00395125628049 38.0 35.0 40.0 30.0 41.0 50 35.92275613357254 38.0 35.0 40.0 30.0 41.0 51 35.04356237235982 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 8.0 9 30.0 10 34.0 11 32.0 12 27.0 13 29.0 14 22.0 15 44.0 16 78.0 17 104.0 18 204.0 19 364.0 20 646.0 21 1272.0 22 1825.0 23 2471.0 24 3162.0 25 4072.0 26 5068.0 27 5698.0 28 6443.0 29 7436.0 30 9432.0 31 11793.0 32 15927.0 33 23945.0 34 48914.0 35 46184.0 36 41896.0 37 63770.0 38 115925.0 39 131051.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.1162782633453 18.791919361520787 21.983767910688833 15.10803446444508 2 31.64618644454462 28.02563115159501 23.398737423050882 16.92944498080949 3 31.391225473466356 27.352183776305967 25.47583893474861 15.78075181547907 4 28.668235002107945 24.000824927408214 29.172681762351555 18.15825830813229 5 28.50160696589144 27.725408676703285 24.062146964832905 19.71083739257237 6 25.81895033462487 34.92125775878904 24.87302140613622 14.386770500449877 7 74.34147249542366 6.453231908630164 14.076327685987366 5.128967909958808 8 75.05306363803938 9.070733875133001 10.513444309187173 5.362758177640452 9 69.01558054266353 7.792826416657693 12.233381454098813 10.958211586579965 10 45.59293482525957 21.23914317053184 18.842656047247168 14.32526595696142 11 37.13250122735327 21.938871419002897 23.154726815798455 17.773900537845368 12 32.7251622935172 20.001934564275896 26.74662865673712 20.52627448546978 13 28.67115509912817 20.77977540803793 29.665265628450506 20.883803864383392 14 22.621809109607664 24.98763521417999 30.00490941311525 22.385646263097094 15 22.770369045511536 22.60501855174138 34.52175198520971 20.10286041753737 16 27.314405021106825 23.764114562706347 28.372575178810315 20.54890523737651 17 25.7377351362499 25.480401586342705 29.05624289367014 19.72562038373725 18 26.248387102661486 25.182551690279908 28.28497226820361 20.284088938854993 19 24.43007918938107 28.922100936803623 25.771498758046235 20.876321115769073 20 27.9431384107737 27.569548498248853 28.01030064223884 16.47701244873861 21 25.930826551712183 29.959465403238024 26.870732780096617 17.238975264953176 22 23.423740753786547 24.30451501751146 31.05176419486537 21.219980033836624 23 25.70908168423896 25.12798237721448 29.903801053790012 19.259134884756545 24 27.553487964637625 22.639512197792772 27.9026220646181 21.904377772951506 25 24.175118218302803 26.541491841066417 25.394806242437408 23.888583698193372 26 21.884484612001234 24.741799546289926 30.008377028326766 23.365338813382074 27 22.84994168931263 25.67020789265723 27.804798814440613 23.675051603589527 28 19.502415467753917 27.937115710669485 29.57711519965251 22.98335362192409 29 26.253862284574403 25.98941099818041 26.401509690159457 21.355217027085725 30 24.080397571209303 27.308747333130146 28.91370565787048 19.69714943779007 31 26.95760566644827 24.307252608467916 27.120401075325727 21.614740649758087 32 29.00860881102775 26.76049911758318 25.93776178213521 18.293130289253863 33 26.712682528877025 24.337731121116498 26.980783936546292 21.968802413460185 34 24.359084330576884 24.68084252099276 29.51415060765394 21.445922540776415 35 23.27499831181891 29.045840048035597 26.83970674925674 20.83945489088875 36 22.010961314189665 31.40892856165146 26.04288527486326 20.53722484929562 37 23.370448983167467 31.235730307139452 25.898887990553487 19.494932719139594 38 22.72419501137925 28.806209586313503 25.622756316078604 22.84683908622864 39 24.533012609343945 27.210741576888893 25.53989856312976 22.716347250637405 40 24.78760856829468 23.39362725326549 27.437049095956212 24.381715082483616 41 20.99750514210835 26.25678238159463 24.87393393645504 27.871778539841984 42 21.89397492731696 25.038371899906377 26.810505779054512 26.257147393722157 43 21.952011855593902 24.191726270105324 26.21444097480139 27.641820899499386 44 21.102811140900158 24.162342793839326 27.736906558720413 26.997939506540103 45 23.008904470851043 23.571935677562887 26.901393798808964 26.5177660527771 46 23.324274949035182 27.53067470666713 25.991236058818057 23.153814285479633 47 20.277336214495726 24.90057982176458 30.52176658569481 24.300317378044888 48 21.190231545443098 24.27951168677579 29.673478401319887 24.856778366461228 49 23.196520704400402 22.34184480779374 30.874368300886797 23.58726618691906 50 20.68341220637056 22.567787314733533 29.838828895090042 26.90997158380587 51 19.91779926888071 22.01716652035764 29.76345389075552 28.30158032000613 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 106.0 1 498.0 2 890.0 3 2966.0 4 5042.0 5 3280.5 6 1519.0 7 1465.0 8 1411.0 9 1422.0 10 1433.0 11 1407.5 12 1382.0 13 1353.0 14 1324.0 15 1317.5 16 1311.0 17 1350.5 18 1390.0 19 1394.0 20 1398.0 21 1700.0 22 2002.0 23 2088.0 24 2174.0 25 2569.0 26 3473.5 27 3983.0 28 5183.5 29 6384.0 30 6983.5 31 7583.0 32 8782.0 33 9981.0 34 10597.5 35 11214.0 36 12960.5 37 14707.0 38 15963.5 39 17220.0 40 18543.0 41 19866.0 42 21884.5 43 23903.0 44 26459.5 45 29016.0 46 42180.5 47 55345.0 48 50082.5 49 44820.0 50 45975.5 51 47131.0 52 43563.5 53 39996.0 54 37170.5 55 34345.0 56 32773.5 57 31202.0 58 31124.0 59 31046.0 60 30631.0 61 30216.0 62 27581.0 63 24946.0 64 20943.5 65 16941.0 66 13166.0 67 9391.0 68 7475.5 69 5560.0 70 4583.0 71 3606.0 72 2870.5 73 2135.0 74 1654.5 75 1027.0 76 880.0 77 695.5 78 511.0 79 392.5 80 274.0 81 202.0 82 130.0 83 77.0 84 24.0 85 31.5 86 39.0 87 21.0 88 3.0 89 5.0 90 7.0 91 3.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 547927.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.07015969649792 #Duplication Level Percentage of deduplicated Percentage of total 1 72.05100479702038 24.547892397276218 2 8.424132468864999 5.7402307703736755 3 3.4167243298118546 3.4922503066679913 4 2.169081400230021 2.956037988021605 5 1.7513102610948208 2.9833710136808005 6 1.4647065094558143 2.9941670811395777 7 1.2695192809470575 3.0276907247754616 8 1.1025251862518162 3.0050567332008393 9 0.9409145104680648 2.885139686915922 >10 7.32007253868014 40.54316268510876 >50 0.05659230720586995 1.3474727077890891 >100 0.026409743362737357 1.5009869056237932 >500 0.002694871771707894 0.7104622385439756 >1k 0.0032338461260494724 2.3715740012394533 >5k 0.0010779487086831575 1.8945047596428524 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCG 5229 0.9543242074217915 No Hit GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC 5088 0.9285908524310721 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC 4994 0.911435282437259 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2466 0.4500599532419465 No Hit GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 2075 0.3787000823102348 Illumina Single End Adapter 1 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT 1157 0.21115951577491163 No Hit GAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT 1117 0.2038592732243529 No Hit CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC 1106 0.20185170652294923 Illumina Single End Adapter 1 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTC 891 0.16261290281369598 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTA 876 0.15987531185723647 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATATCGCT 809 0.14764740558505057 No Hit CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT 732 0.133594438675225 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCC 561 0.10238590177158635 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1399821509069639 0.0 2 0.0 0.0 0.0 0.8373378205490878 0.0 3 0.0 0.0 0.0 1.0813484278015137 0.0 4 0.0 0.0 0.0 1.602585745911408 0.0 5 0.0 0.0 0.0 3.402095534624138 0.0 6 0.0 0.0 0.0 4.104196361924125 0.0 7 0.0 0.0 0.0 4.938249073325461 0.0 8 0.0 0.0 0.0 5.89476335351242 0.0 9 0.0 0.0 0.0 6.322557566975163 0.0 10 0.0 0.0 0.0 8.022966563064058 0.0 11 0.0 0.0 0.0 9.110520197033546 0.0 12 0.0 0.0 0.0 10.87663137607747 0.0 13 0.0 0.0 0.0 11.293840237841902 0.0 14 0.0 0.0 0.0 11.492589341280864 0.0 15 0.0 0.0 0.0 11.91874100016973 0.0 16 0.0 0.0 0.0 12.428662942326259 0.0 17 0.0 0.0 0.0 12.986218967125183 0.0 18 0.0 0.0 0.0 13.507821297362606 0.0 19 0.0 0.0 0.0 14.123049238310942 0.0 20 0.0 0.0 0.0 14.56617396112986 0.0 21 0.0 0.0 0.0 15.08321363977318 0.0 22 0.0 0.0 0.0 15.621606527876889 0.0 23 0.0 0.0 0.0 16.093202196642984 0.0 24 0.0 0.0 0.0 16.49216045203102 0.0 25 0.0 0.0 0.0 16.858997640196595 0.0 26 0.0 0.0 0.0 17.21743954942903 0.0 27 0.0 0.0 0.0 17.559820925050236 0.0 28 0.0 0.0 0.0 17.925563076833228 0.0 29 0.0 0.0 0.0 18.280537370854148 0.0 30 0.0 0.0 0.0 18.65686487433545 0.0 31 0.0 0.0 0.0 19.018591892715637 0.0 32 0.0 0.0 0.0 19.381048935350876 0.0 33 0.0 0.0 0.0 19.777817117973743 0.0 34 0.0 0.0 0.0 20.17038766113004 0.0 35 0.0 0.0 0.0 20.550000273759096 0.0 36 0.0 0.0 0.0 20.940745756277753 0.0 37 0.0 0.0 0.0 21.34353663900483 0.0 38 0.0 0.0 0.0 21.878461911897023 0.0 39 0.0 0.0 0.0 22.38874886618108 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGCACG 30 2.1634132E-6 45.000004 1 TACGAAT 35 1.2103737E-7 45.000004 12 TTACGCG 25 3.888124E-5 45.0 1 ACGTAGG 40 6.8030204E-9 45.0 2 GCTACGA 25 3.888124E-5 45.0 10 TCGACGG 20 7.030052E-4 45.0 2 AAGTGCG 20 7.030052E-4 45.0 1 CTTACGA 20 7.030052E-4 45.0 29 CGTAAGG 85 0.0 42.35294 2 TACGGCT 625 0.0 41.039997 7 ATGACGG 55 6.002665E-11 40.90909 2 CGTTTTT 1380 0.0 40.76087 1 GATACCT 605 0.0 40.537193 5 CGATGAA 495 0.0 40.454544 19 CCGATGA 495 0.0 40.0 18 TGATACC 620 0.0 39.556454 4 AAATGCG 40 3.453806E-7 39.375 1 ACGGCTG 660 0.0 38.86364 8 AACGTAG 35 6.242304E-6 38.57143 1 CTCGAAT 35 6.242304E-6 38.57143 43 >>END_MODULE