SRR3551721_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551721_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527163
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGC	8824	1.6738655785781629	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTC	8514	1.6150602375356389	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCG	7978	1.51338390592663	No Hit
GCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	3232	0.6130931040304423	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2939	0.557512572012831	No Hit
GAACTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCT	1893	0.359091969656444	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGCATCAT	1826	0.3463824282053179	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCT	1822	0.34562364961122083	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGGCATCATCGTA	1731	0.3283614365955122	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTC	1552	0.2944060945096678	No Hit
CTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGCT	1217	0.23085838725403718	No Hit
CCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	799	0.15156602417089213	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCC	717	0.13601106299190194	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTTC	25	3.887923E-5	45.0	44
GTAGCGT	25	3.887923E-5	45.0	14
CGGTCTA	25	3.887923E-5	45.0	31
GTAAGCG	20	7.0298085E-4	45.0	1
CCGTTCC	25	3.887923E-5	45.0	45
TTGTGCG	30	2.1632568E-6	44.999996	1
TAGCGCG	30	2.1632568E-6	44.999996	1
TACGGCT	845	0.0	42.869823	7
CGTTTTT	1705	0.0	42.492672	1
AACGAGC	130	0.0	41.53846	15
TGATACC	955	0.0	40.994766	4
GATGAAT	710	0.0	40.880283	20
TTACGGG	100	0.0	40.5	3
CGATCAT	50	1.0786607E-9	40.5	10
CGATGAA	695	0.0	40.467625	19
ACGGCTG	900	0.0	40.250004	8
TACGGGT	45	1.9248546E-8	40.0	4
GATACCT	985	0.0	39.974617	5
TCGTTCA	40	3.4534787E-7	39.375	16
GCGAACC	40	3.4534787E-7	39.375	33