SRR3551720_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551720_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	449010
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	7862	1.75096323021759	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	7638	1.701075699873054	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	7554	1.682367875993853	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3518	0.7835014810360572	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	3119	0.6946393176098528	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCT	1813	0.40377719872608625	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCCAATT	1507	0.3356272688804258	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCT	1466	0.32649606912986345	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCCAATTCGTA	1388	0.3091245183848912	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTC	1361	0.30311128928086234	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	1310	0.2917529676399189	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	1054	0.23473864724616378	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCC	587	0.13073205496536827	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	535	0.11915102113538674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	20	7.0286903E-4	45.0	26
TCCGATT	20	7.0286903E-4	45.0	11
CCGATAG	20	7.0286903E-4	45.0	11
TAACGCG	25	3.8869963E-5	45.0	1
ACGGGCC	25	3.8869963E-5	45.0	5
GTTACGG	25	3.8869963E-5	45.0	2
CTTGCAC	20	7.0286903E-4	45.0	31
ACGTCAG	20	7.0286903E-4	45.0	1
TTCGCTT	20	7.0286903E-4	45.0	14
TAAGCCG	20	7.0286903E-4	45.0	45
TCGACAA	25	3.8869963E-5	45.0	19
TAAGACG	20	7.0286903E-4	45.0	1
CGGGTAT	30	2.1625365E-6	44.999996	6
ACGTAGG	30	2.1625365E-6	44.999996	2
TCGACGG	30	2.1625365E-6	44.999996	2
TACGGCT	915	0.0	43.27869	7
ACGGCTG	940	0.0	42.606384	8
TTACGGG	90	0.0	42.5	3
CGAATGC	80	0.0	42.1875	45
CGCGAGG	70	0.0	41.785713	2