SRR3551718_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551718_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	696816
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7183	1.0308316686184014	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTC	7073	1.0150455787467565	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	4622	0.6633027944249271	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	4610	0.6615806755298386	No Hit
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	1945	0.2791267709122638	TruSeq Adapter, Index 27 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT	1811	0.259896443250442	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCT	891	0.12786732796032238	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTT	792	0.11365984707584212	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTC	743	0.10662786158756402	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	738	0.1059103120479438	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACCATTGT	731	0.10490574269247548	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTT	700	0.10045693554683016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	35	1.2110104E-7	45.0	1
GCTACGT	20	7.031372E-4	45.0	34
CACGTCG	20	7.031372E-4	45.0	20
CGTTTTT	3890	0.0	43.264782	1
GCGAACC	65	0.0	41.53846	33
TACGGGA	185	0.0	41.351353	4
CTACGAA	95	0.0	40.263157	11
CGATGAA	620	0.0	39.55645	19
AATAGCG	40	3.455607E-7	39.375	1
CCCGCAT	70	0.0	38.571426	23
TGATACC	585	0.0	38.46154	4
GATACCT	585	0.0	38.46154	5
TACGGCT	545	0.0	38.394497	7
CGAATAT	100	0.0	38.249996	14
GCTACGA	100	0.0	38.249996	10
GGCGAAC	100	0.0	38.249996	32
GATGAAT	665	0.0	37.894737	20
CGTACAT	30	1.1394606E-4	37.500004	35
CGGTCTA	30	1.1394606E-4	37.500004	31
GTACGAG	30	1.1394606E-4	37.500004	1