SRR3551715_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551715_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	569262
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC	5103	0.896423790802829	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG	4715	0.8282653681433154	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC	4507	0.791726832284607	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3987	0.7003804926378363	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	3241	0.5693336284522769	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	1425	0.25032410383970827	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT	1228	0.21571789439660474	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT	1172	0.20588059628079863	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTCTGT	960	0.16863939627096133	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT	935	0.16424774532640507	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTC	880	0.15458611324838123	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTA	877	0.15405911513503448	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	710	0.12472288682539849	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCC	626	0.10996693965168937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAC	20	7.030281E-4	45.000004	26
CCGTCGA	20	7.030281E-4	45.000004	41
TATTGCG	20	7.030281E-4	45.000004	1
CCATCGC	20	7.030281E-4	45.000004	29
CGGATCA	20	7.030281E-4	45.000004	42
CGTCGAA	20	7.030281E-4	45.000004	42
GCAATCG	20	7.030281E-4	45.000004	21
AATAGCG	20	7.030281E-4	45.000004	1
ATCGGGT	20	7.030281E-4	45.000004	4
CGCAATC	20	7.030281E-4	45.000004	20
GCGCTAG	30	2.1635642E-6	45.000004	1
GTTGCGT	20	7.030281E-4	45.000004	27
TGCGACT	25	3.888317E-5	45.0	21
CGTTTTT	2290	0.0	42.93668	1
CGAGGGT	75	0.0	42.0	4
TCGAAGG	65	0.0	41.53846	2
ACGGCTG	550	0.0	40.909092	8
TACGGCT	555	0.0	40.54054	7
GCGAGAC	45	1.9254003E-8	40.0	21
CACGACC	45	1.9254003E-8	40.0	27