Basic Statistics
Measure | Value |
---|---|
Filename | SRR3551715_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 569262 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGC | 5103 | 0.896423790802829 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCG | 4715 | 0.8282653681433154 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTC | 4507 | 0.791726832284607 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3987 | 0.7003804926378363 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC | 3241 | 0.5693336284522769 | TruSeq Adapter, Index 16 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC | 1425 | 0.25032410383970827 | TruSeq Adapter, Index 16 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT | 1228 | 0.21571789439660474 | TruSeq Adapter, Index 13 (95% over 22bp) |
GAATGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT | 1172 | 0.20588059628079863 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTCTGT | 960 | 0.16863939627096133 | No Hit |
GAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT | 935 | 0.16424774532640507 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTC | 880 | 0.15458611324838123 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTA | 877 | 0.15405911513503448 | No Hit |
TCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC | 710 | 0.12472288682539849 | TruSeq Adapter, Index 16 (95% over 21bp) |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCC | 626 | 0.10996693965168937 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGCAC | 20 | 7.030281E-4 | 45.000004 | 26 |
CCGTCGA | 20 | 7.030281E-4 | 45.000004 | 41 |
TATTGCG | 20 | 7.030281E-4 | 45.000004 | 1 |
CCATCGC | 20 | 7.030281E-4 | 45.000004 | 29 |
CGGATCA | 20 | 7.030281E-4 | 45.000004 | 42 |
CGTCGAA | 20 | 7.030281E-4 | 45.000004 | 42 |
GCAATCG | 20 | 7.030281E-4 | 45.000004 | 21 |
AATAGCG | 20 | 7.030281E-4 | 45.000004 | 1 |
ATCGGGT | 20 | 7.030281E-4 | 45.000004 | 4 |
CGCAATC | 20 | 7.030281E-4 | 45.000004 | 20 |
GCGCTAG | 30 | 2.1635642E-6 | 45.000004 | 1 |
GTTGCGT | 20 | 7.030281E-4 | 45.000004 | 27 |
TGCGACT | 25 | 3.888317E-5 | 45.0 | 21 |
CGTTTTT | 2290 | 0.0 | 42.93668 | 1 |
CGAGGGT | 75 | 0.0 | 42.0 | 4 |
TCGAAGG | 65 | 0.0 | 41.53846 | 2 |
ACGGCTG | 550 | 0.0 | 40.909092 | 8 |
TACGGCT | 555 | 0.0 | 40.54054 | 7 |
GCGAGAC | 45 | 1.9254003E-8 | 40.0 | 21 |
CACGACC | 45 | 1.9254003E-8 | 40.0 | 27 |