SRR3551714_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551714_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379103
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	9064	2.390906956684595	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	8000	2.110244445440949	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	7611	2.0076338092813826	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3480	0.9179563337668127	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	3144	0.8293260670582928	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	1772	0.4674191446651701	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATGAGT	1651	0.4355016974278758	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTA	1461	0.3853833918486533	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	1420	0.3745683890657684	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	1356	0.35768643350224083	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	793	0.20917798065433404	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	658	0.17356760563751802	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	447	0.11790990838901301	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATG	412	0.10867758894020886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGGT	30	2.1616397E-6	45.000004	4
ACGGGTA	30	2.1616397E-6	45.000004	5
TAGTCGG	35	1.2090459E-7	45.000004	2
TTTAGTC	20	7.027299E-4	45.0	29
TTAGGCG	45	3.8380676E-10	45.0	1
CGTATTC	20	7.027299E-4	45.0	23
CGACGGT	20	7.027299E-4	45.0	28
CGTGCCC	25	3.8858438E-5	45.0	28
ACACCGC	25	3.8858438E-5	45.0	37
CTATACG	20	7.027299E-4	45.0	1
CCAATAG	20	7.027299E-4	45.0	13
TAAACGG	20	7.027299E-4	45.0	2
TCGGGAT	50	2.1827873E-11	45.0	5
CGACCCG	25	3.8858438E-5	45.0	32
CGACAAG	25	3.8858438E-5	45.0	42
CGTTAGG	25	3.8858438E-5	45.0	2
AGACGTG	25	3.8858438E-5	45.0	24
CTAACGG	20	7.027299E-4	45.0	2
CTACGCG	20	7.027299E-4	45.0	1
CTACGAA	45	3.8380676E-10	45.0	11