SRR3551712_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551712_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	857438
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC	11172	1.3029513504183392	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC	10248	1.195188456774717	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG	10070	1.1744289383022446	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6597	0.7693850750724833	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	4877	0.568787480844096	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT	2634	0.30719422278928626	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT	2582	0.30112964435912565	No Hit
CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	2283	0.2662583183857025	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC	2181	0.2543624145419261	No Hit
CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT	2091	0.2438660287974174	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCTCTCAT	1945	0.22683855858965896	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTA	1932	0.22532241398211883	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC	1317	0.15359711139464313	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	1128	0.13155470133117497	No Hit
TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC	1068	0.12455711083483587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGAT	30	2.1648539E-6	45.000004	25
CACGTAG	30	2.1648539E-6	45.000004	1
GTTTACG	20	7.0322823E-4	45.0	1
ATATGCG	20	7.0322823E-4	45.0	1
CAGTACG	20	7.0322823E-4	45.0	1
TGTCGCG	20	7.0322823E-4	45.0	2
CGTTTTT	3860	0.0	43.076424	1
TACGGCT	1160	0.0	40.926723	7
TGCGTAG	50	1.0804797E-9	40.5	1
AAATGCG	50	1.0804797E-9	40.5	1
TTTAGCG	45	1.9274012E-8	40.0	1
CGATCTC	45	1.9274012E-8	40.0	34
CTCGTCC	40	3.4568438E-7	39.375	37
GCGATAT	40	3.4568438E-7	39.375	9
TATACGG	40	3.4568438E-7	39.375	2
CGTATGG	75	0.0	39.000004	2
ACGGCTG	1235	0.0	38.805664	8
TCGTTAG	35	6.2464333E-6	38.571426	1
CCGATGA	660	0.0	38.18182	18
TGATACC	1380	0.0	37.826088	4