##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551712_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 857438 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.321997625484293 31.0 31.0 33.0 28.0 34.0 2 31.287711764582397 31.0 31.0 34.0 28.0 34.0 3 31.132495877252932 31.0 31.0 34.0 28.0 34.0 4 34.930625887819296 35.0 35.0 37.0 32.0 37.0 5 35.29917498408048 35.0 35.0 37.0 33.0 37.0 6 35.25265150366557 37.0 35.0 37.0 33.0 37.0 7 35.55617199144428 37.0 35.0 37.0 33.0 37.0 8 35.16305785374569 37.0 35.0 37.0 32.0 37.0 9 37.07175679174471 39.0 37.0 39.0 33.0 39.0 10 36.5782109027125 38.0 35.0 39.0 32.0 39.0 11 36.83344218474105 39.0 37.0 39.0 33.0 39.0 12 36.98790932988741 39.0 37.0 39.0 33.0 39.0 13 37.043687123733726 39.0 37.0 39.0 33.0 39.0 14 38.06859388084036 40.0 37.0 41.0 33.0 41.0 15 38.150381718561576 40.0 37.0 41.0 33.0 41.0 16 38.19602933389936 40.0 37.0 41.0 34.0 41.0 17 38.00746059773418 40.0 37.0 41.0 33.0 41.0 18 37.957701897979796 39.0 37.0 41.0 33.0 41.0 19 37.882188566403634 39.0 37.0 41.0 33.0 41.0 20 37.83631936070013 39.0 36.0 41.0 33.0 41.0 21 37.686596581910294 39.0 36.0 41.0 33.0 41.0 22 37.862213944331835 39.0 36.0 41.0 33.0 41.0 23 37.88465871584884 40.0 36.0 41.0 33.0 41.0 24 37.74595014450024 39.0 36.0 41.0 33.0 41.0 25 37.31414166388707 39.0 35.0 41.0 32.0 41.0 26 37.45988631247974 39.0 36.0 41.0 33.0 41.0 27 37.56260510964058 39.0 36.0 41.0 33.0 41.0 28 37.3659763154887 39.0 36.0 41.0 32.0 41.0 29 37.50032888675333 39.0 36.0 41.0 33.0 41.0 30 37.21126192214481 39.0 36.0 41.0 32.0 41.0 31 37.17312388767468 39.0 36.0 41.0 32.0 41.0 32 37.101974720038065 39.0 36.0 41.0 32.0 41.0 33 36.94226871214012 39.0 36.0 41.0 31.0 41.0 34 36.87937670128919 39.0 36.0 41.0 31.0 41.0 35 36.774439667941 39.0 36.0 41.0 31.0 41.0 36 36.675100706989895 39.0 35.0 41.0 30.0 41.0 37 36.7497941542129 40.0 36.0 41.0 31.0 41.0 38 36.62320657586904 39.0 35.0 41.0 30.0 41.0 39 36.55786890713964 39.0 35.0 41.0 30.0 41.0 40 36.51779137383694 39.0 35.0 41.0 30.0 41.0 41 36.264194029189284 39.0 35.0 41.0 30.0 41.0 42 36.33948810292989 39.0 35.0 41.0 30.0 41.0 43 36.396601270295925 39.0 35.0 41.0 30.0 41.0 44 36.51839899794504 39.0 35.0 41.0 30.0 41.0 45 36.45943496789272 39.0 35.0 41.0 30.0 41.0 46 36.382728547136935 39.0 35.0 41.0 30.0 41.0 47 36.198723406240454 39.0 35.0 41.0 30.0 41.0 48 36.1775708564351 39.0 35.0 41.0 30.0 41.0 49 36.302639957641254 39.0 35.0 41.0 30.0 41.0 50 36.258780226675285 39.0 35.0 41.0 30.0 41.0 51 35.408198610278525 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 14.0 9 29.0 10 37.0 11 28.0 12 33.0 13 30.0 14 27.0 15 51.0 16 73.0 17 139.0 18 254.0 19 462.0 20 861.0 21 1457.0 22 2467.0 23 3663.0 24 5082.0 25 7179.0 26 9297.0 27 10527.0 28 10732.0 29 11413.0 30 13516.0 31 17141.0 32 22103.0 33 30686.0 34 49403.0 35 58258.0 36 70398.0 37 110264.0 38 204902.0 39 216883.0 40 26.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.48299935388914 19.858462069560716 21.794578733389468 16.86395984316067 2 31.88883627737516 28.364849703418788 23.179985025156338 16.566328994049716 3 29.27535285350078 27.786732101912907 27.319992815807094 15.617922228779225 4 27.16348004170564 23.023705504071433 31.84860013202121 17.96421432220172 5 27.876184633757777 26.5717171387319 26.175070384097744 19.377027843412584 6 24.54451517194246 34.47981078515298 26.63411232065759 14.341561722246974 7 71.87680042172146 5.952150476186033 16.933119362566156 5.237929739526356 8 71.72425294890125 8.9086324608893 13.09085904753463 6.2762555426748055 9 65.56963885435448 8.043030516492154 14.80223642992263 11.585094199230731 10 35.25362766753981 28.468647295781153 21.794462106881195 14.483262929797839 11 26.096697370538745 23.727313228478327 30.969352886156198 19.206636514826727 12 23.354341655023454 21.381954147122006 33.902509569205 21.361194628649535 13 22.788353210377892 22.499002843354273 36.37767395426842 18.334969991999422 14 19.152055308955283 27.619256436033858 31.64520350159428 21.583484753416574 15 17.018606593129764 25.838253028207287 37.735323137066466 19.407817241596476 16 19.62485917349126 26.4246511118005 31.57301169297372 22.377478021734515 17 19.418780133374074 26.603439548981967 32.31312351446985 21.664656803174108 18 19.047557957543283 26.15221158847637 32.66300303928681 22.13722741469354 19 20.176852437144145 27.104467028519846 30.33140588590662 22.387274648429393 20 21.878316566328994 27.34844968382554 32.97509557542353 17.79813817442194 21 21.143103058180298 28.737821276873664 31.46081699201575 18.658258672930288 22 19.781138694576168 24.329805770213124 31.97537314651322 23.91368238869749 23 20.12833580970286 27.45236390269617 32.101912907988684 20.31738737961229 24 20.978309801991514 24.771237104023847 30.917220836958474 23.333232257026165 25 18.924866870840805 29.93697503492964 29.067174536234692 22.070983557994865 26 18.77208614500407 26.268138337699053 31.627243019320346 23.33253249797653 27 21.58686692215647 26.451941714736225 30.27414227034491 21.687049092762393 28 17.180134307086924 26.308374483053004 32.59979147180321 23.911699738056864 29 19.60468278756015 23.46023852453472 31.644970248577742 25.29010843932739 30 18.95518976299161 25.53397446812481 33.0523023238998 22.45853344498378 31 19.5623473650573 23.983308414136065 29.769032863017504 26.685311357789132 32 19.774490983604647 25.467613984917858 30.95010951229127 23.80778551918623 33 18.400747342665007 24.668022644202846 29.71316876555506 27.218061247577086 34 18.705375782272306 23.554239490202207 31.528810246338512 26.21157448118698 35 18.257063484473512 23.43516382525617 30.700528784588503 27.607243905681813 36 17.262006115894092 26.90142027761774 28.92524007566728 26.911333530820887 37 17.385513588154478 24.668955656269027 35.13980019546602 22.80573056011047 38 17.96164853901973 25.210452534177396 28.402403439082473 28.425495487720394 39 20.17976809985095 23.8622500985494 32.294113393621465 23.663868407978185 40 19.42659410942832 22.675575376878562 31.96277748361981 25.935053030073313 41 17.90683408013174 26.4052911114273 30.302249258838536 25.38562554960242 42 19.091292898145408 25.08542891730947 31.13193023868781 24.69134794585731 43 20.596124734383128 25.566863143457603 29.5082559905206 24.328756131638674 44 20.003195566326664 23.60217298510213 30.692831435042535 25.701800013528675 45 19.56607941332201 21.848110300686464 29.982109493631025 28.6037007923605 46 22.24615657341989 24.487718062413844 29.274536467942873 23.9915888962234 47 17.4519906978697 23.647657323328332 34.62372789636102 24.276624082440946 48 19.025165667955 24.091537813812778 30.410595285023522 26.4727012332087 49 19.209085671500446 21.959488616086528 34.37543006024926 24.45599565216377 50 19.19765627368976 21.998091990324664 32.33796496073185 26.46628677525372 51 18.468157464446406 21.603544512839413 29.697657439954845 30.23064058275934 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 185.0 1 548.5 2 912.0 3 6026.0 4 11140.0 5 7546.0 6 3952.0 7 3917.5 8 3883.0 9 3761.5 10 3640.0 11 3679.0 12 3718.0 13 3534.0 14 3350.0 15 3159.0 16 2968.0 17 2934.5 18 2901.0 19 2956.0 20 3011.0 21 3920.0 22 4829.0 23 4745.5 24 4662.0 25 5696.0 26 7546.5 27 8363.0 28 10580.5 29 12798.0 30 14241.0 31 15684.0 32 17506.5 33 19329.0 34 21704.0 35 24079.0 36 26368.5 37 28658.0 38 30896.0 39 33134.0 40 35989.0 41 38844.0 42 42416.5 43 45989.0 44 50594.0 45 55199.0 46 83572.0 47 111945.0 48 101190.5 49 90436.0 50 86793.0 51 83150.0 52 69750.0 53 56350.0 54 48330.0 55 40310.0 56 35970.0 57 31630.0 58 29211.5 59 26793.0 60 24793.0 61 22793.0 62 20495.0 63 18197.0 64 15255.0 65 12313.0 66 10095.0 67 7877.0 68 6750.5 69 5624.0 70 4899.0 71 4174.0 72 3581.0 73 2988.0 74 2598.0 75 1720.0 76 1232.0 77 1059.0 78 886.0 79 596.0 80 306.0 81 226.0 82 146.0 83 107.5 84 69.0 85 53.5 86 38.0 87 22.0 88 6.0 89 7.0 90 8.0 91 4.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 857438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.775734700959354 #Duplication Level Percentage of deduplicated Percentage of total 1 73.25803759726735 24.743440425982076 2 10.383809475557662 7.0144158806348695 3 3.675187659781723 3.723964901190814 4 1.8272896027787546 2.4687219538110647 5 1.1713053073104955 1.9780848656772483 6 0.8677342760658843 1.7585017619598198 7 0.7004466958140337 1.6560671238984865 8 0.6399908237758434 1.7292928219921053 9 0.5835931964949762 1.7740160080289242 >10 6.771241768408275 40.92077859488833 >50 0.06746286495978496 1.5636651905711971 >100 0.04625030533837832 2.8679914836607496 >500 0.002434226596756405 0.5042299713061923 >1k 0.003825213223474351 2.823358968147741 >5k 3.4774665667948646E-4 0.7748439600994528 >10k+ 0.0010432399700384593 3.698626088150943 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC 11172 1.3029513504183392 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC 10248 1.195188456774717 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG 10070 1.1744289383022446 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6597 0.7693850750724833 No Hit GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC 4877 0.568787480844096 No Hit GAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT 2634 0.30719422278928626 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 2582 0.30112964435912565 No Hit CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC 2283 0.2662583183857025 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC 2181 0.2543624145419261 No Hit CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT 2091 0.2438660287974174 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCTCTCAT 1945 0.22683855858965896 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTA 1932 0.22532241398211883 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC 1317 0.15359711139464313 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 1128 0.13155470133117497 No Hit TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC 1068 0.12455711083483587 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.3325301654463645E-4 0.0 0.0 0.2500472337358503 0.0 2 2.3325301654463645E-4 0.0 0.0 1.335840025751133 0.0 3 2.3325301654463645E-4 0.0 0.0 1.7632761785691793 0.0 4 2.3325301654463645E-4 0.0 0.0 2.668764388795458 0.0 5 2.3325301654463645E-4 0.0 0.0 5.4784135995838765 0.0 6 2.3325301654463645E-4 0.0 0.0 6.55417651188774 0.0 7 2.3325301654463645E-4 0.0 0.0 7.796365451496201 0.0 8 2.3325301654463645E-4 0.0 0.0 9.453628134045843 0.0 9 2.3325301654463645E-4 0.0 0.0 9.989177060032329 0.0 10 2.3325301654463645E-4 0.0 0.0 12.218026259624603 0.0 11 2.3325301654463645E-4 0.0 0.0 13.74630002402506 0.0 12 2.3325301654463645E-4 0.0 0.0 16.248405132499375 0.0 13 2.3325301654463645E-4 0.0 0.0 16.847748758510818 0.0 14 2.3325301654463645E-4 0.0 0.0 17.10875888402427 0.0 15 2.3325301654463645E-4 0.0 0.0 17.712301064333513 0.0 16 2.3325301654463645E-4 0.0 0.0 18.45474541599509 0.0 17 2.3325301654463645E-4 0.0 0.0 19.356851457481476 0.0 18 2.3325301654463645E-4 0.0 0.0 20.261523282149845 0.0 19 2.3325301654463645E-4 0.0 0.0 21.153832696941354 0.0 20 2.3325301654463645E-4 0.0 0.0 21.804841866117435 0.0 21 2.3325301654463645E-4 0.0 0.0 22.548452482861734 0.0 22 2.3325301654463645E-4 0.0 0.0 23.415687198374695 0.0 23 6.997590496339094E-4 0.0 0.0 24.180057333591467 0.0 24 6.997590496339094E-4 0.0 0.0 24.79549541774449 0.0 25 6.997590496339094E-4 0.0 0.0 25.32486313879254 0.0 26 6.997590496339094E-4 0.0 0.0 25.821692064032618 0.0 27 6.997590496339094E-4 0.0 0.0 26.356307977952923 0.0 28 6.997590496339094E-4 0.0 0.0 26.88485931344307 0.0 29 6.997590496339094E-4 0.0 0.0 27.421341251495736 0.0 30 6.997590496339094E-4 0.0 0.0 28.021034757031995 0.0 31 6.997590496339094E-4 0.0 0.0 28.57617693640823 0.0 32 6.997590496339094E-4 0.0 0.0 29.10846032016309 0.0 33 6.997590496339094E-4 0.0 0.0 29.634795751996062 0.0 34 6.997590496339094E-4 0.0 0.0 30.155999617465053 0.0 35 8.163855579062276E-4 0.0 0.0 30.70029553157196 0.0 36 8.163855579062276E-4 0.0 0.0 31.2128690354288 0.0 37 8.163855579062276E-4 0.0 0.0 31.75506567238681 0.0 38 8.163855579062276E-4 0.0 0.0 32.279418453579154 0.0 39 8.163855579062276E-4 0.0 0.0 32.802371716672226 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTGAT 30 2.1648539E-6 45.000004 25 CACGTAG 30 2.1648539E-6 45.000004 1 GTTTACG 20 7.0322823E-4 45.0 1 ATATGCG 20 7.0322823E-4 45.0 1 CAGTACG 20 7.0322823E-4 45.0 1 TGTCGCG 20 7.0322823E-4 45.0 2 CGTTTTT 3860 0.0 43.076424 1 TACGGCT 1160 0.0 40.926723 7 TGCGTAG 50 1.0804797E-9 40.5 1 AAATGCG 50 1.0804797E-9 40.5 1 TTTAGCG 45 1.9274012E-8 40.0 1 CGATCTC 45 1.9274012E-8 40.0 34 CTCGTCC 40 3.4568438E-7 39.375 37 GCGATAT 40 3.4568438E-7 39.375 9 TATACGG 40 3.4568438E-7 39.375 2 CGTATGG 75 0.0 39.000004 2 ACGGCTG 1235 0.0 38.805664 8 TCGTTAG 35 6.2464333E-6 38.571426 1 CCGATGA 660 0.0 38.18182 18 TGATACC 1380 0.0 37.826088 4 >>END_MODULE