SRR3551710_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551710_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394578
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1985	0.50306910167318	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1488	0.3771117497681067	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	1122	0.28435442422030627	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1032	0.26154524580691274	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	594	0.15054057752839742	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	514	0.13026575227204762	No Hit
TCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	489	0.12392986937943828	No Hit
ACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	398	0.10086725565034037	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC	397	0.10061382033463599	No Hit
AGGCAGGAGACTCAGCCCGAGGAAATCGCAGATAAGTTTTTAATTAAAAAG	395	0.10010694970322724	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	25	3.8861326E-5	45.0	25
CGACGGT	25	3.8861326E-5	45.0	28
CACGACG	25	3.8861326E-5	45.0	26
CACGACA	25	3.8861326E-5	45.0	12
CGTTCGG	20	7.027649E-4	45.0	2
TCAGCGT	20	7.027649E-4	45.0	37
TCAGCGA	20	7.027649E-4	45.0	13
GACGGTC	25	3.8861326E-5	45.0	29
GTATACT	25	3.8861326E-5	45.0	10
CGGTCTA	25	3.8861326E-5	45.0	31
TATCGTG	20	7.027649E-4	45.0	1
GCTTTCG	20	7.027649E-4	45.0	9
ACGGTCT	25	3.8861326E-5	45.0	30
AAGTACG	30	2.1618653E-6	44.999996	1
TCGATCA	55	6.002665E-11	40.909092	17
GCGATGT	50	1.0768417E-9	40.5	9
ATGCCCG	50	1.0768417E-9	40.5	1
CGTTTTT	1055	0.0	40.308056	1
GCCCGGT	45	1.9228537E-8	40.0	3
GGACGCA	40	3.450532E-7	39.375	10