SRR3551708_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551708_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	167195
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1934	1.1567331558958103	No Hit
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	752	0.4497742157361165	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	572	0.3421154938843865	No Hit
CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT	531	0.31759322946260354	No Hit
TCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	333	0.1991686354257005	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	303	0.18122551511707885	No Hit
ACTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	298	0.17823499506564192	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	265	0.1584975627261581	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	248	0.14832979455127246	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCC	242	0.14474117048954815	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	232	0.13876013038667423	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	172	0.1028738897694309	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCA	20	7.01598E-4	45.0	35
AAGTAGG	50	2.1827873E-11	45.0	2
CTCAACG	20	7.01598E-4	45.0	1
GGTAACG	20	7.01598E-4	45.0	34
TTAGCAT	20	7.01598E-4	45.0	36
GTCCTCT	20	7.01598E-4	45.0	8
CGGCAGA	20	7.01598E-4	45.0	16
GACCGAG	20	7.01598E-4	45.0	9
TCGGGTA	20	7.01598E-4	45.0	27
ATAGCGG	25	3.8764658E-5	45.0	2
GCGTTTT	20	7.01598E-4	45.0	9
TAACGGT	20	7.01598E-4	45.0	36
CGACAGG	40	6.7557266E-9	45.0	2
CGCTGGT	20	7.01598E-4	45.0	12
ACGGGCC	35	1.2036071E-7	45.0	5
CGTTAGG	25	3.8764658E-5	45.0	2
ATTCCTC	20	7.01598E-4	45.0	11
AACGGTA	20	7.01598E-4	45.0	37
AATGCGG	20	7.01598E-4	45.0	2
CTAAAGG	25	3.8764658E-5	45.0	2