SRR3551704_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551704_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	863033
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5658	0.6555948613784178	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTC	4919	0.5699666177307241	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGC	3622	0.4196826772556785	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCG	3274	0.37935976955689993	No Hit
GCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	2543	0.2946584893045805	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	1419	0.16442013225450244	No Hit
GAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	1229	0.1424047516143647	No Hit
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	1191	0.13800167548633716	TruSeq Adapter, Index 13 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	937	0.10857058768320561	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAG	25	3.8899958E-5	45.0	1
GTATACG	25	3.8899958E-5	45.0	1
CGGTCTA	40	6.8121153E-9	45.0	31
GACTACG	20	7.0323097E-4	45.0	1
TCGAACG	30	2.164872E-6	44.999996	1
CGTTTTT	3710	0.0	42.99865	1
CTACGAA	70	0.0	41.785717	11
TATAGCG	60	3.6379788E-12	41.249996	1
ACACGAC	180	0.0	40.0	26
CACGACC	180	0.0	40.0	27
TGATGCG	45	1.9274012E-8	40.0	1
AACACGT	195	0.0	39.23077	41
CGAATAT	75	0.0	39.0	14
TCGCGCG	35	6.2464787E-6	38.57143	1
GCGAGAC	200	0.0	38.25	21
TCAAGCG	200	0.0	38.25	17
GCGTAAG	90	0.0	37.5	1
GCCGAAT	30	1.1396864E-4	37.499996	17
CGTTTAC	30	1.1396864E-4	37.499996	33
CGCCCCG	30	1.1396864E-4	37.499996	25