SRR3551701_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551701_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	454670
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGC	3021	0.664437944003343	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTC	2734	0.601315239624343	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCG	2570	0.5652451228363429	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1811	0.39831086282358635	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1353	0.2975784635010007	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	769	0.16913365737787844	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACAAGT	643	0.1414212505773418	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCT	577	0.1269052279675369	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	543	0.11942727692612223	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	538	0.11832757824356127	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	535	0.11766775903402468	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	495	0.10887016957353685	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	464	0.10205203774165877	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTA	458	0.1007323993225856	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGTT	20	7.028782E-4	45.000004	4
GCGGTAA	20	7.028782E-4	45.000004	41
CGGCATG	20	7.028782E-4	45.000004	2
TATTGCG	20	7.028782E-4	45.000004	1
CATCGGT	20	7.028782E-4	45.000004	12
ATCGGTC	20	7.028782E-4	45.000004	13
TATACGG	30	2.1625965E-6	45.000004	2
CAATCCG	20	7.028782E-4	45.000004	1
CTGGACG	20	7.028782E-4	45.000004	41
GCGAATG	35	1.2097553E-7	45.0	1
ACGGGAA	70	0.0	41.785713	5
AACGGGT	50	1.0786607E-9	40.5	4
CGTTTTT	750	0.0	39.899998	1
CGATGAA	255	0.0	39.705883	19
TTGCGGG	165	0.0	39.545452	3
TTGGACG	40	3.452078E-7	39.375004	1
CCGATGA	270	0.0	39.166664	18
TACGGCT	355	0.0	38.661972	7
GGCCGAT	35	6.2399613E-6	38.571426	8
CGAACAC	30	1.1388367E-4	37.500004	34