Basic Statistics
Measure | Value |
---|---|
Filename | SRR3551696_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 541887 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4534 | 0.8367058076683885 | No Hit |
GCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC | 1113 | 0.20539337537161806 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 954 | 0.17605146460424406 | No Hit |
CCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC | 874 | 0.16128823906091122 | No Hit |
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT | 736 | 0.13582167499866207 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGCGGA | 20 | 7.029981E-4 | 45.000004 | 17 |
ACGGGTA | 20 | 7.029981E-4 | 45.000004 | 5 |
TGGCACG | 25 | 3.8880673E-5 | 45.0 | 1 |
TATAGCG | 25 | 3.8880673E-5 | 45.0 | 1 |
TAGTCGG | 25 | 3.8880673E-5 | 45.0 | 2 |
ACACGAC | 85 | 0.0 | 42.35294 | 26 |
CGTTTTA | 455 | 0.0 | 42.03297 | 1 |
CGTTTTT | 2195 | 0.0 | 41.822327 | 1 |
AGGCGAT | 140 | 0.0 | 41.785717 | 7 |
GCGTACG | 45 | 1.9250365E-8 | 40.0 | 1 |
GACCGTT | 35 | 6.242177E-6 | 38.57143 | 9 |
GCAAACG | 35 | 6.242177E-6 | 38.57143 | 1 |
TAGGCGA | 35 | 6.242177E-6 | 38.57143 | 6 |
CACGACC | 95 | 0.0 | 37.894737 | 27 |
CAAACGG | 60 | 1.546141E-10 | 37.500004 | 2 |
CTCGTAC | 30 | 1.1391256E-4 | 37.500004 | 29 |
CGTGCTA | 30 | 1.1391256E-4 | 37.500004 | 38 |
GTCTACG | 30 | 1.1391256E-4 | 37.500004 | 1 |
TACGGGT | 30 | 1.1391256E-4 | 37.500004 | 4 |
TAACGCC | 30 | 1.1391256E-4 | 37.500004 | 12 |