SRR3551696_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551696_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	541887
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4534	0.8367058076683885	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	1113	0.20539337537161806	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	954	0.17605146460424406	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	874	0.16128823906091122	No Hit
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT	736	0.13582167499866207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGGA	20	7.029981E-4	45.000004	17
ACGGGTA	20	7.029981E-4	45.000004	5
TGGCACG	25	3.8880673E-5	45.0	1
TATAGCG	25	3.8880673E-5	45.0	1
TAGTCGG	25	3.8880673E-5	45.0	2
ACACGAC	85	0.0	42.35294	26
CGTTTTA	455	0.0	42.03297	1
CGTTTTT	2195	0.0	41.822327	1
AGGCGAT	140	0.0	41.785717	7
GCGTACG	45	1.9250365E-8	40.0	1
GACCGTT	35	6.242177E-6	38.57143	9
GCAAACG	35	6.242177E-6	38.57143	1
TAGGCGA	35	6.242177E-6	38.57143	6
CACGACC	95	0.0	37.894737	27
CAAACGG	60	1.546141E-10	37.500004	2
CTCGTAC	30	1.1391256E-4	37.500004	29
CGTGCTA	30	1.1391256E-4	37.500004	38
GTCTACG	30	1.1391256E-4	37.500004	1
TACGGGT	30	1.1391256E-4	37.500004	4
TAACGCC	30	1.1391256E-4	37.500004	12