SRR3551695_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551695_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	542906
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4520	0.8325566488489721	No Hit
GCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	1425	0.26247637712605865	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	1228	0.2261901692005614	No Hit
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT	1051	0.19358784025227202	No Hit
CGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTG	614	0.1130950846002807	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	60	0.0	45.000004	14
GCATACG	30	2.1633768E-6	45.000004	1
GTTTACG	25	3.8880775E-5	45.0	1
CGCATCG	25	3.8880775E-5	45.0	21
ATTGTCG	20	7.029994E-4	45.0	11
GTCAACG	25	3.8880775E-5	45.0	1
GACGATG	20	7.029994E-4	45.0	1
CGTTTTT	2230	0.0	42.275787	1
GTTAGCG	65	0.0	41.53846	1
TCAACGG	65	0.0	41.53846	2
CGGTCTA	45	1.9250365E-8	40.000004	31
CCCGATT	90	0.0	40.000004	42
CCGCGAG	40	3.4537334E-7	39.375	16
ATCGAGG	40	3.4537334E-7	39.375	2
CTCGATC	70	0.0	38.57143	16
AAGGGCG	135	0.0	38.333332	5
CAAGGGC	235	0.0	38.29787	4
TCGATCA	65	9.094947E-12	38.07692	17
CTACGAA	65	9.094947E-12	38.07692	11
AGGGCGC	65	9.094947E-12	38.07692	6