SRR3551694_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551694_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	153307
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4729	3.084660191641608	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	965	0.6294559283007299	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	633	0.4128969975278363	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	344	0.2243863620056488	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT	262	0.17089891524848833	TruSeq Adapter, Index 13 (95% over 22bp)
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	215	0.14024147625353048	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	203	0.1324140450207753	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	35	1.202734E-7	45.0	26
GAGCTAC	20	7.0141506E-4	45.0	21
CAACGAG	50	2.1827873E-11	45.0	14
CGTGCAG	25	3.8749527E-5	45.0	2
GACACGA	35	1.202734E-7	45.0	25
GGGTACA	20	7.0141506E-4	45.0	7
TGAACGG	25	3.8749527E-5	45.0	2
CGACCAA	35	1.202734E-7	45.0	29
TTGTAGG	40	6.7484507E-9	45.0	2
CACGACC	35	1.202734E-7	45.0	27
AGGCGAT	20	7.0141506E-4	45.0	7
ACGGGTG	25	3.8749527E-5	45.0	5
ATCGTGG	20	7.0141506E-4	45.0	2
CAGGGTA	20	7.0141506E-4	45.0	5
CAGGGCG	20	7.0141506E-4	45.0	5
ACCTAGG	20	7.0141506E-4	45.0	3
TCGTGGG	25	3.8749527E-5	45.0	3
GTCACTT	35	1.202734E-7	45.0	4
ATGACGG	20	7.0141506E-4	45.0	2
TGCTCAC	20	7.0141506E-4	45.0	45