SRR3551693_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551693_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	152607
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4866	3.188582437240756	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	800	0.5242223489092899	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	485	0.317809799026257	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT	341	0.22344977622258483	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	322	0.2109994954359892	No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	229	0.1500586473752842	TruSeq Adapter, Index 16 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	172	0.11270780501549732	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTG	171	0.11205252707936073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGA	20	7.01405E-4	45.0	13
ATGGGTC	25	3.8748687E-5	45.0	5
CAACGAC	20	7.01405E-4	45.0	12
GGCCGAT	20	7.01405E-4	45.0	8
CGATTGG	20	7.01405E-4	45.0	10
TGACGGG	40	6.7484507E-9	45.0	3
ACGGGTG	25	3.8748687E-5	45.0	5
CGTTATT	205	0.0	45.0	1
CTTGCGG	20	7.01405E-4	45.0	2
TGCGACG	20	7.01405E-4	45.0	1
GCGGGTG	25	3.8748687E-5	45.0	5
CAGGCCG	20	7.01405E-4	45.0	26
GACGGGT	25	3.8748687E-5	45.0	4
CGTAAGG	20	7.01405E-4	45.0	2
CTCGACG	20	7.01405E-4	45.0	1
CACAACG	20	7.01405E-4	45.0	12
ACATATC	20	7.01405E-4	45.0	36
CGGGTAT	30	2.1531032E-6	44.999996	6
ATAGCGG	30	2.1531032E-6	44.999996	2
GTAGGGC	45	3.8016879E-10	44.999996	4