##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551693_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 152607 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.297882796988343 31.0 31.0 34.0 28.0 34.0 2 31.45702359655848 31.0 31.0 34.0 28.0 34.0 3 31.358142155995466 31.0 31.0 34.0 28.0 34.0 4 35.173891105912574 37.0 35.0 37.0 32.0 37.0 5 32.877010884166516 37.0 35.0 37.0 28.0 37.0 6 34.028622540250446 37.0 35.0 37.0 28.0 37.0 7 35.263310333077776 37.0 35.0 37.0 32.0 37.0 8 35.06875831383881 37.0 35.0 37.0 33.0 37.0 9 37.018406757226074 39.0 37.0 39.0 32.0 39.0 10 36.477114418080426 38.0 35.0 39.0 32.0 39.0 11 36.66813448924361 39.0 35.0 39.0 32.0 39.0 12 36.695918273735806 39.0 35.0 39.0 33.0 39.0 13 36.599972478326684 39.0 35.0 39.0 32.0 39.0 14 37.500737187678155 40.0 36.0 41.0 32.0 41.0 15 37.81091955152778 40.0 36.0 41.0 33.0 41.0 16 37.93051432765208 40.0 36.0 41.0 33.0 41.0 17 37.92128801431127 40.0 36.0 41.0 33.0 41.0 18 37.679169369688154 39.0 36.0 40.0 33.0 41.0 19 37.344715511084026 38.0 36.0 40.0 33.0 41.0 20 37.17514268677059 39.0 35.0 40.0 33.0 41.0 21 36.991238933993856 38.0 35.0 40.0 33.0 41.0 22 37.13783771386634 38.0 35.0 40.0 33.0 41.0 23 37.204774355042694 39.0 35.0 40.0 33.0 41.0 24 37.05289403500495 38.0 35.0 40.0 33.0 41.0 25 36.65864606472835 38.0 35.0 40.0 32.0 41.0 26 36.81841593111719 38.0 35.0 40.0 33.0 41.0 27 36.78731644026814 38.0 35.0 40.0 33.0 41.0 28 36.73611957511778 38.0 35.0 40.0 33.0 41.0 29 36.792473477625535 38.0 35.0 40.0 33.0 41.0 30 36.32585005930265 38.0 35.0 40.0 31.0 41.0 31 36.026512545296086 38.0 35.0 40.0 31.0 41.0 32 35.65101207677236 38.0 35.0 40.0 29.0 41.0 33 35.26314651359374 38.0 35.0 40.0 24.0 41.0 34 34.8670572123166 38.0 35.0 40.0 21.0 41.0 35 34.67040175090265 38.0 35.0 41.0 18.0 41.0 36 34.4396521784715 38.0 35.0 40.0 18.0 41.0 37 34.4317822904585 38.0 34.0 40.0 18.0 41.0 38 34.23614906262491 38.0 34.0 40.0 18.0 41.0 39 34.17998519071865 38.0 34.0 40.0 17.0 41.0 40 33.992962314965894 38.0 34.0 40.0 15.0 41.0 41 33.81981167312115 38.0 34.0 40.0 15.0 41.0 42 33.93051432765208 38.0 34.0 40.0 15.0 41.0 43 33.88708250604494 38.0 34.0 40.0 15.0 41.0 44 33.87448151133303 38.0 34.0 40.0 15.0 41.0 45 33.82822544182115 38.0 34.0 40.0 15.0 41.0 46 33.76238311479814 38.0 34.0 40.0 15.0 41.0 47 33.736158891793956 38.0 34.0 40.0 15.0 41.0 48 33.71002640770082 37.0 34.0 40.0 15.0 41.0 49 33.716579187062194 37.0 34.0 40.0 14.0 41.0 50 33.64192992457751 37.0 34.0 40.0 13.0 41.0 51 32.84537406540984 36.0 32.0 40.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 8.0 10 12.0 11 7.0 12 5.0 13 9.0 14 7.0 15 15.0 16 26.0 17 45.0 18 91.0 19 167.0 20 256.0 21 449.0 22 637.0 23 1059.0 24 1699.0 25 2863.0 26 4045.0 27 4511.0 28 4015.0 29 3493.0 30 3299.0 31 3743.0 32 4497.0 33 6360.0 34 11115.0 35 13046.0 36 12671.0 37 17346.0 38 27788.0 39 29311.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.50941962033196 17.212840826436533 19.73172921294567 25.54601034028583 2 44.61918522741421 18.37333805133447 20.58883275341236 16.418643967838957 3 27.84079367263625 19.299245775095507 37.38491681246601 15.475043739802238 4 25.855301526142316 21.56781799000046 35.88367506077702 16.693205423080197 5 20.196976547602667 29.15986815807925 34.31428440372984 16.32887089058824 6 22.24996232151867 26.980413742488878 37.152948423073646 13.616675512918805 7 65.81480534968908 5.529890503056872 24.247249470863068 4.408054676390991 8 65.66998892580288 4.34252688277733 24.181721677249403 5.805762514170385 9 60.20890260604035 6.824064426926681 26.561691141297583 6.405341825735386 10 34.26120689090278 19.818225900515703 32.81304265204086 13.107524556540657 11 27.601617225946384 21.072427870281178 35.970827026283196 15.355127877489236 12 24.750502925815983 20.0239831724626 39.76488627651418 15.460627625207232 13 20.848322816122458 24.619447338588664 40.29631668272098 14.235913162567904 14 17.075232459847843 26.053195462855573 39.886112694699456 16.985459382597128 15 15.599546547668194 21.36075016218129 47.05550859397013 15.984194696180385 16 17.253468058477004 21.0960178759821 44.32889710170569 17.32161696383521 17 18.143335495750524 20.284128513108833 39.82189545695807 21.750640534182576 18 19.10331767219066 20.21532432981449 42.55637028445615 18.124987713538697 19 20.23629322377086 21.143197887383934 39.776681279364645 18.843827609480563 20 22.371188739703946 21.21527846035896 39.79502906157647 16.618503738360626 21 19.790704227197967 23.073646687242395 40.67637788568021 16.45927119987943 22 18.54436559266613 21.893491124260358 39.25180365251922 20.3103396305543 23 17.360933640003406 24.097190823487782 39.31077866677151 19.2310968697373 24 18.535191701560215 21.348299881394695 41.71433813652061 18.402170280524484 25 16.977596047363487 22.50224432693127 40.57677563938745 19.943383986317798 26 15.753536862660297 24.188274456610774 40.184919433577754 19.87326924715118 27 17.636150373180783 23.491058732561417 40.90506988539189 17.96772100886591 28 14.629735202186007 22.45768542727398 43.64478693637906 19.26779243416095 29 15.795474650573041 21.08553342900391 42.30212244523515 20.8168694751879 30 18.254732744893747 20.91581644354453 41.53479198201918 19.29465882954255 31 18.512256973795434 21.905286127110816 38.673848512846725 20.908608386247028 32 19.07055377538383 22.554011283886062 37.551357408244705 20.824077532485404 33 19.07645127680906 22.331872063535748 37.652925488345886 20.93875117130931 34 16.4533736984542 22.874442194656865 38.28133702910089 22.39084707778804 35 16.658475692464958 23.145071982281284 37.29121206759847 22.905240257655286 36 21.001657853178425 23.680434056104897 36.309605719265825 19.00830237145085 37 18.129574659091656 24.401895063791308 36.68770108841665 20.780829188700388 38 17.726578728367638 26.3061327462043 35.20218600719495 20.765102518233107 39 19.815604788771157 23.710576841167182 34.86013092453164 21.613687445530022 40 20.601938312135093 22.57956712339539 35.475436906563914 21.3430576579056 41 17.8995721035077 22.682445759368836 35.17007738832426 24.247904748799204 42 20.984620626838872 22.470135708060575 34.02334100008519 22.521902665015368 43 21.462318242282464 22.014717542445627 33.87131651890149 22.651647696370418 44 18.858899002011704 23.778070468589252 34.55280557248357 22.810224956915476 45 19.003060147961758 23.76299907605811 33.29008498954832 23.943855786431815 46 19.679306978054743 23.483195397327776 34.65240781877633 22.185089805841148 47 17.341930579855447 23.994967465450472 36.873144744343314 21.78995721035077 48 18.698355907658236 21.488529359727927 36.8639708532374 22.94914387937644 49 19.809052009409793 20.482022449822093 37.535630737777424 22.17329480299069 50 17.997208515992057 22.185745083777284 36.434763805067924 23.38228259516274 51 17.32816974319658 21.945913359151284 34.08231601433748 26.643600883314654 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 68.0 1 157.0 2 246.0 3 3996.5 4 7747.0 5 5009.0 6 2271.0 7 2174.0 8 2077.0 9 2141.0 10 2205.0 11 2219.0 12 2233.0 13 2093.5 14 1954.0 15 1825.5 16 1697.0 17 1528.5 18 1360.0 19 1298.5 20 1237.0 21 1133.0 22 1029.0 23 1070.0 24 1111.0 25 1127.0 26 1278.5 27 1414.0 28 1590.5 29 1767.0 30 1977.0 31 2187.0 32 2258.0 33 2329.0 34 2908.0 35 3487.0 36 3805.0 37 4123.0 38 4493.5 39 4864.0 40 5210.5 41 5557.0 42 7071.5 43 8586.0 44 9297.5 45 10009.0 46 11315.5 47 12622.0 48 13693.5 49 14765.0 50 15023.5 51 15282.0 52 12922.0 53 10562.0 54 9405.0 55 8248.0 56 6812.0 57 5376.0 58 4874.0 59 4372.0 60 3758.5 61 3145.0 62 2927.0 63 2709.0 64 2285.5 65 1862.0 66 1506.5 67 1151.0 68 952.5 69 754.0 70 578.5 71 403.0 72 358.0 73 313.0 74 241.5 75 128.0 76 86.0 77 60.5 78 35.0 79 27.5 80 20.0 81 15.0 82 10.0 83 9.0 84 8.0 85 8.0 86 8.0 87 5.0 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 152607.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.40870340154776 #Duplication Level Percentage of deduplicated Percentage of total 1 79.2326086055094 37.56315241109517 2 8.233700534907186 7.806981331131599 3 2.837634245117417 4.035856808665395 4 1.5107326984478016 2.8648751367892693 5 1.044934968002322 2.4769505985963947 6 0.9219201371131598 2.6224223004187226 7 0.7560574437794578 2.509059217467089 8 0.7477643091127728 2.8360429075992584 9 0.6040166415568978 2.5772081228252963 >10 4.066400364897926 28.76866723020569 >50 0.03040816044451202 0.9357368928030824 >100 0.01105751288891346 1.2902422562529898 >500 0.0013821891111141826 0.5242223489092899 >1k 0.0013821891111141826 3.188582437240756 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4866 3.188582437240756 No Hit GCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC 800 0.5242223489092899 TruSeq Adapter, Index 16 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC 485 0.317809799026257 TruSeq Adapter, Index 16 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT 341 0.22344977622258483 TruSeq Adapter, Index 13 (95% over 22bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 322 0.2109994954359892 No Hit TCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC 229 0.1500586473752842 TruSeq Adapter, Index 16 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC 172 0.11270780501549732 TruSeq Adapter, Index 13 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTG 171 0.11205252707936073 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0013105558722732247 0.0 0.0 0.23393422320077062 0.0 2 0.0013105558722732247 0.0 0.0 1.3924656142903011 0.0 3 0.0013105558722732247 0.0 0.0 1.8564023930750229 0.0 4 0.0013105558722732247 0.0 0.0 2.4520500370232035 0.0 5 0.0013105558722732247 0.0 0.0 3.7586742416796084 0.0 6 0.0013105558722732247 0.0 0.0 4.5279705387039915 0.0 7 0.0013105558722732247 0.0 0.0 5.298577391600648 0.0 8 0.0013105558722732247 0.0 0.0 6.559987418663626 0.0 9 0.0013105558722732247 0.0 0.0 7.033753366490397 0.0 10 0.0013105558722732247 0.0 0.0 8.078266396692158 0.0 11 0.0013105558722732247 0.0 0.0 9.663383724206621 0.0 12 0.0013105558722732247 0.0 0.0 10.789151218489323 0.0 13 0.0013105558722732247 0.0 0.0 11.311407733590203 0.0 14 0.0013105558722732247 0.0 0.0 11.526994174579148 0.0 15 0.0013105558722732247 0.0 0.0 11.972583171152044 0.0 16 0.0013105558722732247 0.0 0.0 12.814615319087592 0.0 17 0.0013105558722732247 0.0 0.0 13.827019730418657 0.0 18 0.0013105558722732247 0.0 0.0 14.92526555138362 0.0 19 0.0013105558722732247 0.0 0.0 15.471767350121555 0.0 20 0.0013105558722732247 0.0 0.0 16.037927486943587 0.0 21 0.0013105558722732247 0.0 0.0 16.778391554777958 0.0 22 0.0013105558722732247 0.0 0.0 17.448740883445712 0.0 23 0.0013105558722732247 0.0 0.0 18.140059106069838 0.0 24 0.0013105558722732247 0.0 0.0 18.62562005674707 0.0 25 0.0013105558722732247 0.0 0.0 19.134771013125217 0.0 26 0.0013105558722732247 0.0 0.0 19.616400296185628 0.0 27 0.0013105558722732247 0.0 0.0 20.084924020523307 0.0 28 0.0013105558722732247 0.0 0.0 20.514131068692787 0.0 29 0.0013105558722732247 0.0 0.0 21.021316191262525 0.0 30 0.0013105558722732247 0.0 0.0 21.553401875405452 0.0 31 0.0013105558722732247 0.0 0.0 22.059931720039053 0.0 32 0.0013105558722732247 0.0 0.0 22.504865438675814 0.0 33 0.0013105558722732247 0.0 0.0 22.991736945225316 0.0 34 0.0013105558722732247 0.0 0.0 23.41504649196957 0.0 35 0.0013105558722732247 0.0 0.0 23.842942984266777 0.0 36 0.0013105558722732247 0.0 0.0 24.27149475450012 0.0 37 0.0013105558722732247 0.0 0.0 24.721015418689838 0.0 38 0.0013105558722732247 0.0 0.0 25.157430524156823 0.0 39 0.0013105558722732247 0.0 0.0 25.665926202598833 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGA 20 7.01405E-4 45.0 13 ATGGGTC 25 3.8748687E-5 45.0 5 CAACGAC 20 7.01405E-4 45.0 12 GGCCGAT 20 7.01405E-4 45.0 8 CGATTGG 20 7.01405E-4 45.0 10 TGACGGG 40 6.7484507E-9 45.0 3 ACGGGTG 25 3.8748687E-5 45.0 5 CGTTATT 205 0.0 45.0 1 CTTGCGG 20 7.01405E-4 45.0 2 TGCGACG 20 7.01405E-4 45.0 1 GCGGGTG 25 3.8748687E-5 45.0 5 CAGGCCG 20 7.01405E-4 45.0 26 GACGGGT 25 3.8748687E-5 45.0 4 CGTAAGG 20 7.01405E-4 45.0 2 CTCGACG 20 7.01405E-4 45.0 1 CACAACG 20 7.01405E-4 45.0 12 ACATATC 20 7.01405E-4 45.0 36 CGGGTAT 30 2.1531032E-6 44.999996 6 ATAGCGG 30 2.1531032E-6 44.999996 2 GTAGGGC 45 3.8016879E-10 44.999996 4 >>END_MODULE