SRR3551691_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551691_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	183391
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2401	1.3092245530042368	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGC	2202	1.2007132302021364	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTC	2144	1.169086814511072	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCG	2071	1.1292811533826632	No Hit
GCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	1008	0.5496452933895338	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTCCGAT	783	0.42695661182937	No Hit
GAACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCT	454	0.24755849523695272	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT	451	0.2459226461494839	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTCCGATCGTA	440	0.23992453282876477	No Hit
CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC	389	0.21211509834179432	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTC	355	0.19357547535048067	No Hit
CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT	263	0.14340943666810257	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAC	45	3.8016879E-10	45.000004	34
CGAATGC	90	0.0	45.000004	45
TAATAGG	20	7.0177665E-4	45.0	2
ATAGGGC	55	1.8189894E-12	45.0	4
CGCATGG	20	7.0177665E-4	45.0	2
TAAACGG	20	7.0177665E-4	45.0	2
CGATTGT	20	7.0177665E-4	45.0	10
TACGGGA	20	7.0177665E-4	45.0	4
ACGATGG	25	3.8779475E-5	45.0	2
CTACGAA	20	7.0177665E-4	45.0	11
AGTTAGG	20	7.0177665E-4	45.0	2
GCTACGA	20	7.0177665E-4	45.0	10
CGATCAC	25	3.8779475E-5	45.0	34
CGATGAA	530	0.0	44.150944	19
CGTTTTT	1280	0.0	43.41797	1
CCGATGA	540	0.0	43.333332	18
ATGAATG	590	0.0	43.09322	21
CGATCGA	100	0.0	42.75	41
TCGAATG	100	0.0	42.75	44
GATGAAT	595	0.0	42.73109	20