##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551691_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 183391 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.21248589080162 31.0 31.0 33.0 28.0 34.0 2 31.267570382406987 31.0 31.0 34.0 28.0 34.0 3 31.253218533079593 31.0 31.0 34.0 28.0 34.0 4 35.148682323560045 37.0 35.0 37.0 33.0 37.0 5 32.90139646983767 35.0 35.0 37.0 28.0 37.0 6 33.983025339302365 36.0 35.0 37.0 28.0 37.0 7 35.16833977676113 37.0 35.0 37.0 32.0 37.0 8 34.53539704783768 36.0 35.0 37.0 31.0 37.0 9 36.30027645849578 39.0 35.0 39.0 32.0 39.0 10 36.01446090593323 37.0 35.0 39.0 31.0 39.0 11 36.37535102595002 38.0 35.0 39.0 32.0 39.0 12 36.52707602881276 39.0 35.0 39.0 32.0 39.0 13 36.53424104781587 39.0 35.0 39.0 32.0 39.0 14 37.50658429257706 39.0 36.0 41.0 32.0 41.0 15 37.640538521519595 39.0 36.0 41.0 32.0 41.0 16 37.80802220392495 39.0 37.0 41.0 33.0 41.0 17 37.62278955892056 39.0 36.0 41.0 32.0 41.0 18 37.55739376523385 39.0 36.0 40.0 33.0 41.0 19 37.374156856116166 39.0 36.0 40.0 32.0 41.0 20 37.10711539824746 39.0 35.0 40.0 32.0 41.0 21 37.20424121140078 39.0 35.0 40.0 32.0 41.0 22 37.354881101035495 39.0 35.0 41.0 33.0 41.0 23 37.26494757103675 39.0 35.0 41.0 32.0 41.0 24 37.19545124897078 39.0 35.0 41.0 32.0 41.0 25 36.9468730744693 39.0 35.0 40.0 32.0 41.0 26 36.99033758472335 39.0 35.0 40.0 32.0 41.0 27 36.79773816599506 39.0 35.0 41.0 31.0 41.0 28 36.71825225883495 39.0 35.0 41.0 31.0 41.0 29 36.82033469472329 39.0 35.0 41.0 31.0 41.0 30 36.443173329116476 39.0 35.0 40.0 30.0 41.0 31 36.34230687438315 39.0 35.0 40.0 30.0 41.0 32 36.00703415107612 39.0 35.0 40.0 29.0 41.0 33 35.82313744949316 39.0 35.0 41.0 27.0 41.0 34 35.63385335158214 39.0 35.0 41.0 26.0 41.0 35 35.4478736688278 39.0 35.0 41.0 24.0 41.0 36 35.26352438233065 39.0 35.0 41.0 23.0 41.0 37 35.164402833290616 39.0 35.0 41.0 23.0 41.0 38 35.06897830318827 39.0 35.0 40.0 23.0 41.0 39 34.94386856497865 39.0 35.0 40.0 22.0 41.0 40 34.90923218696665 38.0 35.0 40.0 22.0 41.0 41 34.78301007137755 38.0 34.0 40.0 23.0 41.0 42 34.81724293994798 38.0 35.0 40.0 22.0 41.0 43 34.785867354450325 38.0 34.0 40.0 22.0 41.0 44 34.92801718732108 38.0 35.0 40.0 22.0 41.0 45 34.88856596016162 38.0 35.0 40.0 23.0 41.0 46 34.7642359766837 38.0 34.0 40.0 22.0 41.0 47 34.60445169065003 38.0 34.0 40.0 22.0 41.0 48 34.61699320032063 38.0 34.0 40.0 22.0 41.0 49 34.65199491796217 38.0 34.0 40.0 22.0 41.0 50 34.4904002922717 37.0 34.0 40.0 22.0 41.0 51 33.61885806828034 36.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 9.0 10 8.0 11 3.0 12 12.0 13 10.0 14 15.0 15 23.0 16 38.0 17 52.0 18 76.0 19 192.0 20 389.0 21 815.0 22 1379.0 23 1839.0 24 2176.0 25 2758.0 26 3258.0 27 3420.0 28 3303.0 29 3331.0 30 3663.0 31 4476.0 32 5588.0 33 7598.0 34 12314.0 35 14624.0 36 16496.0 37 23581.0 38 35416.0 39 36520.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.94014428188951 14.707919145432435 18.17319279572062 20.178743776957432 2 33.47874214110834 29.081034510962915 21.320021156981532 16.12020219094721 3 28.955074131227814 28.564106199322758 28.13387788931845 14.346941780130976 4 26.015998604075445 21.008664547333293 35.39813840373846 17.5771984448528 5 27.474630707068503 29.100119416983382 25.48870991488132 17.936539961066792 6 22.361511742670032 36.401459177386016 27.538428821479787 13.698600258464156 7 68.11293902099885 5.301786892486545 22.09541362444177 4.489860462072839 8 67.5060390095479 11.758483240726099 15.094524813104243 5.640952936621754 9 62.09246909608432 7.041785038524247 16.402658800050165 14.463087065341265 10 38.95338375383743 22.152123059474018 23.44717025372019 15.447322932968358 11 31.907781734109093 21.46724757485373 28.456685442578973 18.16828524845821 12 24.70950046621699 19.171060739076616 32.570845897563125 23.548592897143262 13 26.46640238615853 20.509185292626135 35.826730864655296 17.197681456560026 14 19.621464521159705 28.87491752594184 31.359227006777868 20.144390946120584 15 17.802945618923502 22.395319290477723 37.40696108315021 22.394774007448568 16 20.06914188809702 22.066513623896483 32.11498928518848 25.749355202818023 17 20.329241893004564 25.32730613825106 32.65154778587826 21.691904182866118 18 20.560987180395983 21.597570218822078 33.01470628329635 24.82673631748559 19 21.107906058639735 23.413362705912505 31.072408133441666 24.4063231020061 20 26.116330681440203 22.314617402162593 33.44766100844643 18.121390907950772 21 22.586168350682424 28.19822128675889 30.692345862119737 18.523264500438952 22 20.356506044462378 21.305298515194313 35.23400821196242 23.10418722838089 23 23.069289114514888 24.547006123528416 31.828170411852273 20.55553435010442 24 21.56976078433511 24.88017405434291 31.227268513722045 22.322796647599937 25 20.054419246309795 28.65298733307523 29.84279490269424 21.449798517920726 26 20.236543778047995 22.741028730962807 34.71707990032226 22.305347590666933 27 24.145132531040236 24.46848536732991 30.16124019172151 21.225141909908338 28 18.502543745331014 26.83283258175156 33.840264789438955 20.82435888347847 29 22.064877774809013 22.87789477128103 33.56598742577334 21.491240028136605 30 20.321607930596375 27.804526939708058 31.562072293624006 20.31179283607156 31 22.475475895763697 22.29444193008381 29.647038295227134 25.583043878925356 32 25.72754388165177 24.660424993592926 30.101259058514323 19.510772066240982 33 22.781924958149528 23.511513651160634 28.102796756656545 25.603764634033293 34 22.431307970402038 23.031664585503105 29.413657158748247 25.123370285346606 35 24.30326460949556 24.439040083755472 27.874323167440057 23.383372139308907 36 22.83154571380275 28.77949299583949 27.388475988461813 21.00048530189595 37 20.692400390422648 26.681243899646113 30.7414213347438 21.88493437518744 38 20.4235758570486 25.280957080772776 28.305096760473525 25.990370301705102 39 21.530500406235856 24.740581598878897 29.49108734888844 24.237830645996805 40 22.95641552747954 22.46457023518057 28.87437224291268 25.704641994427206 41 20.179289059986587 25.822423128724964 26.96969862206979 27.028589189218664 42 23.20124760757071 24.385602346898157 29.84224961966509 22.570900425866043 43 22.265541929538525 25.878041997698904 28.357443931272524 23.49897214149004 44 21.550130595285484 23.542594783822544 30.853749638749996 24.05352498214198 45 21.598115501851236 21.77206078815209 29.540708104541665 27.08911560545501 46 24.570453293782137 24.772208014569962 28.572285444760105 22.0850532468878 47 19.46551357482101 25.214432551215708 33.05669307654138 22.263360797421903 48 20.93886831960129 25.141909908337922 29.494904330092535 24.424317441968256 49 21.439438140366757 22.306983439754404 33.430211951513435 22.823366468365407 50 21.513596632332014 23.069834397544046 31.124210021211514 24.292358948912433 51 20.835264544061598 22.56435702951617 29.38530244123212 27.21507598519011 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 46.0 1 191.5 2 337.0 3 2324.0 4 4311.0 5 2903.0 6 1495.0 7 1442.0 8 1389.0 9 1335.0 10 1281.0 11 1269.5 12 1258.0 13 1166.0 14 1074.0 15 1032.5 16 991.0 17 893.5 18 796.0 19 835.0 20 874.0 21 851.0 22 828.0 23 877.0 24 926.0 25 1074.5 26 1226.0 27 1229.0 28 1435.0 29 1641.0 30 1979.0 31 2317.0 32 2625.5 33 2934.0 34 3298.5 35 3663.0 36 3928.0 37 4193.0 38 4512.0 39 4831.0 40 5627.0 41 6423.0 42 7130.0 43 7837.0 44 8884.5 45 9932.0 46 15362.5 47 20793.0 48 18482.5 49 16172.0 50 16062.5 51 15953.0 52 14572.5 53 13192.0 54 12190.5 55 11189.0 56 10112.0 57 9035.0 58 8607.5 59 8180.0 60 7629.5 61 7079.0 62 6403.0 63 5727.0 64 5139.0 65 4551.0 66 3814.0 67 3077.0 68 2585.0 69 2093.0 70 1812.0 71 1531.0 72 1313.5 73 1096.0 74 936.5 75 625.0 76 473.0 77 382.0 78 291.0 79 243.5 80 196.0 81 151.5 82 107.0 83 70.0 84 33.0 85 21.5 86 10.0 87 7.0 88 4.0 89 2.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 183391.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.573861312714364 #Duplication Level Percentage of deduplicated Percentage of total 1 74.21189255780189 36.789700694145296 2 9.16140528411466 9.083324699685372 3 4.749543524649669 7.063596359690498 4 3.311921156257562 6.567388803158279 5 2.548562377631608 6.317103892775545 6 1.8654992630397957 5.548800104694342 7 1.2726312779109927 4.416247253136741 8 0.9151505818685792 3.6294038420642236 9 0.5785687572871065 2.5813698600258466 >10 1.3309281298809865 9.09095866209356 >50 0.024198693270563388 0.8097452982970811 >100 0.023098752667355962 2.3174528739142053 >500 0.0010999406032074267 0.42695661182937 >1k 0.005499703016037134 5.357951044489642 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2401 1.3092245530042368 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGC 2202 1.2007132302021364 No Hit GAATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTC 2144 1.169086814511072 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCG 2071 1.1292811533826632 No Hit GCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC 1008 0.5496452933895338 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATTCCGAT 783 0.42695661182937 No Hit GAACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCT 454 0.24755849523695272 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCT 451 0.2459226461494839 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATTCCGATCGTA 440 0.23992453282876477 No Hit CCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGC 389 0.21211509834179432 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTC 355 0.19357547535048067 No Hit CTGTCTCTTATACACATCTGACGCGATTCCGATCGTATGCCGTCTTCTGCT 263 0.14340943666810257 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15213396513460312 0.0 2 0.0 0.0 0.0 1.0676641710880033 0.0 3 0.0 0.0 0.0 1.277052854284016 0.0 4 0.0 0.0 0.0 1.7743509768745467 0.0 5 0.0 0.0 0.0 3.6326755402391613 0.0 6 0.0 0.0 0.0 4.282652910993451 0.0 7 0.0 0.0 0.0 5.037869906374904 0.0 8 0.0 0.0 0.0 5.982300112873587 0.0 9 0.0 0.0 0.0 6.2778435146762925 0.0 10 0.0 0.0 0.0 8.178700154315097 0.0 11 0.0 0.0 0.0 9.137853002601 0.0 12 0.0 0.0 0.0 11.329345496780103 0.0 13 0.0 0.0 0.0 11.743760598938879 0.0 14 0.0 0.0 0.0 11.958056829397298 0.0 15 0.0 0.0 0.0 12.47880212224155 0.0 16 0.0 0.0 0.0 13.081339869459242 5.452830291562835E-4 17 0.0 0.0 0.0 13.701326673609938 5.452830291562835E-4 18 0.0 0.0 0.0 14.321313477760631 5.452830291562835E-4 19 0.0 0.0 0.0 15.198128588643936 5.452830291562835E-4 20 0.0 0.0 0.0 15.635445578027275 5.452830291562835E-4 21 0.0 0.0 0.0 16.098936152810115 5.452830291562835E-4 22 0.0 0.0 0.0 16.572787105146926 5.452830291562835E-4 23 0.0 0.0 0.0 17.051545604746142 5.452830291562835E-4 24 0.0 0.0 0.0 17.434334291213855 5.452830291562835E-4 25 0.0 0.0 0.0 17.76968335414497 5.452830291562835E-4 26 0.0 0.0 0.0 18.099034303755364 5.452830291562835E-4 27 0.0 0.0 0.0 18.506906009564265 5.452830291562835E-4 28 0.0 0.0 0.0 18.83789280826213 5.452830291562835E-4 29 0.0 0.0 0.0 19.17814941845565 5.452830291562835E-4 30 0.0 0.0 0.0 19.575115463681424 5.452830291562835E-4 31 0.0 0.0 0.0 19.956813584090824 5.452830291562835E-4 32 0.0 0.0 0.0 20.327606043917097 5.452830291562835E-4 33 0.0 0.0 0.0 20.679858880752054 5.452830291562835E-4 34 0.0 0.0 0.0 21.037564547878578 5.452830291562835E-4 35 0.0 0.0 0.0 21.409447573763163 5.452830291562835E-4 36 0.0 0.0 0.0 21.75188531607331 5.452830291562835E-4 37 0.0 0.0 0.0 22.125949474074517 5.452830291562835E-4 38 0.0 0.0 0.0 22.48365514120104 5.452830291562835E-4 39 0.0 0.0 0.0 22.90461363970969 5.452830291562835E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACAC 45 3.8016879E-10 45.000004 34 CGAATGC 90 0.0 45.000004 45 TAATAGG 20 7.0177665E-4 45.0 2 ATAGGGC 55 1.8189894E-12 45.0 4 CGCATGG 20 7.0177665E-4 45.0 2 TAAACGG 20 7.0177665E-4 45.0 2 CGATTGT 20 7.0177665E-4 45.0 10 TACGGGA 20 7.0177665E-4 45.0 4 ACGATGG 25 3.8779475E-5 45.0 2 CTACGAA 20 7.0177665E-4 45.0 11 AGTTAGG 20 7.0177665E-4 45.0 2 GCTACGA 20 7.0177665E-4 45.0 10 CGATCAC 25 3.8779475E-5 45.0 34 CGATGAA 530 0.0 44.150944 19 CGTTTTT 1280 0.0 43.41797 1 CCGATGA 540 0.0 43.333332 18 ATGAATG 590 0.0 43.09322 21 CGATCGA 100 0.0 42.75 41 TCGAATG 100 0.0 42.75 44 GATGAAT 595 0.0 42.73109 20 >>END_MODULE