SRR3551685_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551685_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	211813
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTC	2124	1.0027713124312483	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2025	0.9560319715975883	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGC	1875	0.8852147885162855	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCG	1785	0.8427244786675038	No Hit
GCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	829	0.3913829651626671	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATCATCCT	712	0.33614556235925086	No Hit
GAACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCT	427	0.20159291450477543	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATCATCCTCGTA	330	0.15579780277886626	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCT	323	0.1524930009017388	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTC	283	0.1336084187467247	No Hit
CCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCCGTCTTCTGC	274	0.12935938776184652	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCCCTCGAATGC	228	0.10764211828358033	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGTCC	20	7.020245E-4	45.000004	6
ATCGTGA	20	7.020245E-4	45.000004	30
AAACGAT	20	7.020245E-4	45.000004	16
ACGGCTA	20	7.020245E-4	45.000004	30
CGAATGC	170	0.0	45.000004	45
ATACGGT	20	7.020245E-4	45.000004	28
ACGACCT	20	7.020245E-4	45.000004	23
CGGCGAT	50	2.1827873E-11	45.0	31
AACGATG	25	3.8800004E-5	45.0	17
CCGACGT	25	3.8800004E-5	45.0	44
CGTAAGC	50	2.1827873E-11	45.0	43
GCTACGA	35	1.2056626E-7	45.0	10
AATACGG	55	1.8189894E-12	45.0	5
CCCCTCG	125	0.0	44.999996	40
CCCTCGA	185	0.0	43.783783	41
TCGAATG	185	0.0	43.783783	44
CGTTTTT	1045	0.0	43.708134	1
ACGGGAG	100	0.0	42.75	5
CCGATGA	955	0.0	42.643974	18
CTCGAAT	190	0.0	42.63158	43