SRR3551678_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551678_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	635799
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	3438	0.5407369310112158	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2761	0.4342567383717181	No Hit
CTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGCT	2189	0.34429119894809523	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1831	0.28798409560254107	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCC	1655	0.2603023911645032	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTC	1520	0.23906926560123562	No Hit
TCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1462	0.2299468857296095	Illumina Single End Adapter 1 (95% over 21bp)
TGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGCTT	1180	0.1855932456641171	Illumina Single End Adapter 1 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1079	0.16970772209456134	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCG	1070	0.1682921803903435	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGC	848	0.1333754850196367	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTG	669	0.10522193334685961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.030906E-4	45.0	1
TAGAACG	20	7.030906E-4	45.0	1
CACGCGT	20	7.030906E-4	45.0	38
ATAGACG	20	7.030906E-4	45.0	1
ATACTCG	20	7.030906E-4	45.0	43
TGTTGCG	20	7.030906E-4	45.0	1
TCGCTTA	20	7.030906E-4	45.0	28
CACACGG	25	3.888832E-5	45.0	2
TAAGACG	25	3.888832E-5	45.0	1
ACGGTCA	20	7.030906E-4	45.0	5
TATCGCG	55	6.002665E-11	40.909092	32
TACACGG	55	6.002665E-11	40.909092	2
TCGACAC	50	1.0804797E-9	40.5	34
CGTTTTT	1610	0.0	40.248447	1
CGGAATC	120	0.0	39.375004	6
ACAACGG	40	3.4549703E-7	39.375	2
GTATGCG	40	3.4549703E-7	39.375	1
TGTAGCG	40	3.4549703E-7	39.375	1
GCGATTC	35	6.243883E-6	38.57143	8
GCACGGA	100	0.0	38.25	3