SRR3551674_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551674_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	473186
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2275	0.48078345513180865	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1656	0.3499680886585825	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCC	1311	0.2770580701880444	No Hit
CTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT	1112	0.23500272620069063	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC	842	0.17794271174548698	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	787	0.16631937546757514	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	755	0.15955670708769915	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	732	0.15469603918966326	No Hit
TCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	724	0.15300537209469428	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG	688	0.14539737016733378	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	673	0.14222736936426691	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGC	652	0.1377893682399733	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	553	0.11686736293973195	No Hit
TGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCTT	532	0.11242936181543833	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	509	0.10756869391740245	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACCGG	25	3.887314E-5	45.000004	2
TAGGCAC	25	3.887314E-5	45.000004	5
TAGTGCG	25	3.887314E-5	45.000004	1
CGTTCGC	20	7.029074E-4	45.0	45
GTATGCG	35	1.2099008E-7	45.0	1
TCTCGTA	35	1.2099008E-7	45.0	27
CAATGCG	20	7.029074E-4	45.0	1
TCGAAAG	20	7.029074E-4	45.0	1
CGAAAGG	60	0.0	44.999996	2
TAAACGG	30	2.1627839E-6	44.999996	2
ACGGGAT	65	0.0	41.538464	4
GTACGGA	65	0.0	41.538464	3
CGAATAT	165	0.0	40.90909	14
CTACGAA	175	0.0	39.857143	11
GCTACGA	175	0.0	39.857143	10
CGTACGG	40	3.4524783E-7	39.375	30
TCGTACG	40	3.4524783E-7	39.375	29
CGTTTTT	1320	0.0	39.375	1
TACACGG	40	3.4524783E-7	39.375	2
GGACTAA	225	0.0	39.0	7