SRR3551673_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551673_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401200
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2535	0.6318544366899302	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG	1181	0.2943668993020937	No Hit
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	1165	0.29037886340977065	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC	1119	0.278913260219342	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	1117	0.2784147557328016	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC	922	0.22981056829511465	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	911	0.22706879361914256	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	610	0.15204386839481554	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAATCGGT	431	0.10742771684945165	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATACGG	35	1.2092823E-7	45.000004	2
GTCGAAT	25	3.8862512E-5	45.0	43
CGACAGG	25	3.8862512E-5	45.0	2
ATCGTTG	20	7.0277904E-4	45.0	22
CGTTTTT	1570	0.0	41.273888	1
TAAACGG	40	3.4507138E-7	39.375	2
ATTGACG	40	3.4507138E-7	39.375	1
CGAAAGG	35	6.238126E-6	38.57143	2
CGCGAGG	35	6.238126E-6	38.57143	2
TTATACG	35	6.238126E-6	38.57143	1
TATTAGT	35	6.238126E-6	38.57143	30
TTACGGC	35	6.238126E-6	38.57143	3
CGGCACA	30	1.1385975E-4	37.500004	6
ATCGTGA	30	1.1385975E-4	37.500004	2
ACGGCAT	30	1.1385975E-4	37.500004	5
CGGATAA	30	1.1385975E-4	37.500004	6
ATGCGGT	30	1.1385975E-4	37.500004	3
GGACCGA	205	0.0	37.317074	7
GCGATTG	145	0.0	37.241383	8
CGGACAG	55	2.739398E-9	36.81818	6