SRR3551672_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551672_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	292846
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2361	0.8062257978596259	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC	1593	0.5439719169802558	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1501	0.5125560874999147	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	1272	0.43435799020645666	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1234	0.42138188672544613	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	647	0.22093523558457348	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG	578	0.19737336347431755	No Hit
ACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	545	0.18610464203028212	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC	517	0.17654330262322177	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC	500	0.17073820369750656	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC	469	0.16015243506826116	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG	437	0.1492251900316207	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	372	0.12702922355094487	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTC	360	0.1229315066622047	No Hit
TGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCTT	353	0.12054117181043962	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGT	321	0.1096139267737992	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTA	25	3.8836613E-5	45.000004	6
GTGGCGT	25	3.8836613E-5	45.000004	34
GCGTTCA	25	3.8836613E-5	45.000004	37
CGGATCA	25	3.8836613E-5	45.000004	6
CGTAAGG	35	1.2077908E-7	45.000004	2
ATAACGG	25	3.8836613E-5	45.000004	2
GCGTAAG	35	1.2077908E-7	45.000004	1
TGCGTTG	25	3.8836613E-5	45.000004	1
CGGACTT	25	3.8836613E-5	45.000004	6
CGAACGG	40	6.7848305E-9	45.0	2
CACGGAC	20	7.024667E-4	45.0	4
TAACGGA	20	7.024667E-4	45.0	3
ACGGGCC	20	7.024667E-4	45.0	4
ATCCGTA	20	7.024667E-4	45.0	31
ATACTAG	20	7.024667E-4	45.0	1
AACGGAT	20	7.024667E-4	45.0	4
CTTGCGG	40	6.7848305E-9	45.0	2
TACGAAT	20	7.024667E-4	45.0	12
TTGCGGA	40	6.7848305E-9	45.0	3
CGAATAT	20	7.024667E-4	45.0	14