SRR3551667_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551667_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	650753
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5821	0.8945022151261692	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	2788	0.4284267609984126	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG	2755	0.4233557125360928	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	2411	0.3704938740197894	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGC	2361	0.3628104672586988	No Hit
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	2188	0.33622587986532526	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	1943	0.2985771867359812	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC	1943	0.2985771867359812	No Hit
TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	1145	0.17595001482897504	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	1130	0.17364499280064788	No Hit
TGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCTT	790	0.12139782682523169	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	771	0.11847813225601726	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG	768	0.11801712785035183	No Hit
ACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	744	0.11432909260502833	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTGTATT	738	0.11340708379369746	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	714	0.10971904854837397	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	694	0.10664568584393772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAAGCG	25	3.8889328E-5	45.000004	1
ACGGAGT	30	2.1640444E-6	45.000004	5
CTATGCG	20	7.031028E-4	45.0	1
ATATCCG	20	7.031028E-4	45.0	1
TGCGACG	20	7.031028E-4	45.0	1
CGTTTTT	3120	0.0	42.764423	1
TAGGCAC	65	0.0	41.53846	5
ACATACG	110	0.0	40.909092	16
AACGGAT	50	1.0804797E-9	40.500004	4
TCGTTGA	90	0.0	40.0	23
TACGAAT	90	0.0	40.0	12
CGAATAT	90	0.0	40.0	14
GCGATTA	85	0.0	39.705883	8
ACGGACA	40	3.455134E-7	39.375	5
TTGCGAG	40	3.455134E-7	39.375	1
GCGATAT	40	3.455134E-7	39.375	8
TTACGGA	40	3.455134E-7	39.375	3
ATTTGCG	40	3.455134E-7	39.375	1
CATACGA	115	0.0	39.130436	17
TGATCCG	35	6.2441104E-6	38.57143	4