SRR3551657_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551657_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	416457
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2633	0.6322381422331718	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC	1864	0.4475852248851622	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG	1859	0.4463846207411569	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC	1690	0.40580420067377904	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	1491	0.35802015574236956	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC	1425	0.34217218104150005	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	1234	0.29630910274049904	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	869	0.20866500022811477	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	699	0.16784445933193584	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	595	0.14287189313662635	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	547	0.13134609335417582	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAATCACGT	540	0.12966524755256845	No Hit
TGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTT	496	0.11909993108532213	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	490	0.11765920611251583	No Hit
GAACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT	474	0.11381727285169899	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG	456	0.10949509793328004	No Hit
TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	433	0.10397231887085581	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCCA	20	7.0281007E-4	45.0	14
CGGCATA	25	3.8865066E-5	45.0	6
CGATTTA	20	7.0281007E-4	45.0	9
CCGTCGA	20	7.0281007E-4	45.0	41
CGGATTA	25	3.8865066E-5	45.0	6
TCTCGTA	25	3.8865066E-5	45.0	27
ACAGACG	20	7.0281007E-4	45.0	1
TGTAGCG	45	3.8380676E-10	45.0	1
TGGCTAG	35	1.2094279E-7	45.0	1
CGTTTTT	1385	0.0	41.588448	1
GACCTAT	55	6.002665E-11	40.909092	33
TGATTCA	50	1.0786607E-9	40.5	44
ACGGATT	50	1.0786607E-9	40.5	5
TCGTTGA	40	3.4511504E-7	39.375	23
TTAATCG	40	3.4511504E-7	39.375	19
CGGATTC	40	3.4511504E-7	39.375	6
ACGGAAT	155	0.0	39.19355	5
TACGGAT	75	0.0	39.0	4
TAAGCGG	105	0.0	38.57143	2
ATTACGG	35	6.238699E-6	38.571426	2