##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551657_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 416457 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50942114071801 34.0 31.0 34.0 31.0 34.0 2 32.65430764760828 34.0 31.0 34.0 31.0 34.0 3 32.68009662462151 34.0 31.0 34.0 31.0 34.0 4 36.12976369709238 37.0 37.0 37.0 35.0 37.0 5 36.12569845146078 37.0 35.0 37.0 35.0 37.0 6 36.16120751962387 37.0 37.0 37.0 35.0 37.0 7 36.23891782344876 37.0 37.0 37.0 35.0 37.0 8 35.86711233092492 37.0 36.0 37.0 35.0 37.0 9 37.657136270971556 39.0 37.0 39.0 35.0 39.0 10 37.74135865167352 39.0 37.0 39.0 35.0 39.0 11 37.76825218449924 39.0 37.0 39.0 35.0 39.0 12 37.76004245336253 39.0 38.0 39.0 35.0 39.0 13 37.71632365406273 39.0 38.0 39.0 35.0 39.0 14 39.129182604686676 40.0 39.0 41.0 35.0 41.0 15 39.13139411751994 40.0 39.0 41.0 35.0 41.0 16 39.148108928412775 40.0 39.0 41.0 35.0 41.0 17 39.11186028809697 40.0 39.0 41.0 35.0 41.0 18 39.04329138422454 40.0 38.0 41.0 35.0 41.0 19 38.995973173701 40.0 38.0 41.0 35.0 41.0 20 38.83964971173494 40.0 38.0 41.0 35.0 41.0 21 38.83557726247848 40.0 38.0 41.0 35.0 41.0 22 38.804911431432295 40.0 38.0 41.0 35.0 41.0 23 38.77672124613105 40.0 38.0 41.0 35.0 41.0 24 38.74208141536821 40.0 38.0 41.0 35.0 41.0 25 38.71766833070401 40.0 38.0 41.0 35.0 41.0 26 38.644318621130154 40.0 38.0 41.0 35.0 41.0 27 38.512677179156555 40.0 38.0 41.0 35.0 41.0 28 38.464300035778 40.0 38.0 41.0 35.0 41.0 29 38.4193590214596 40.0 38.0 41.0 35.0 41.0 30 38.28110705306911 40.0 38.0 41.0 34.0 41.0 31 38.1743205180847 40.0 38.0 41.0 34.0 41.0 32 37.98300905015404 40.0 38.0 41.0 34.0 41.0 33 37.81300350336289 40.0 37.0 41.0 33.0 41.0 34 37.66532679244196 40.0 37.0 41.0 33.0 41.0 35 37.56145772552748 40.0 37.0 41.0 33.0 41.0 36 37.48738044984236 40.0 37.0 41.0 33.0 41.0 37 37.36485879694662 40.0 37.0 41.0 33.0 41.0 38 37.32259753107764 40.0 37.0 41.0 33.0 41.0 39 37.22015238067796 40.0 37.0 41.0 32.0 41.0 40 37.15836208780258 40.0 36.0 41.0 32.0 41.0 41 37.11727741399472 40.0 36.0 41.0 32.0 41.0 42 37.05149391173639 40.0 36.0 41.0 32.0 41.0 43 36.94064453232867 40.0 36.0 41.0 32.0 41.0 44 36.9028471126671 40.0 35.0 41.0 31.0 41.0 45 36.85436431612387 40.0 35.0 41.0 31.0 41.0 46 36.74878558890834 40.0 35.0 41.0 31.0 41.0 47 36.619557361264185 39.0 35.0 41.0 31.0 41.0 48 36.59543002038626 39.0 35.0 41.0 31.0 41.0 49 36.48797594949779 39.0 35.0 41.0 31.0 41.0 50 36.34915009232646 39.0 35.0 41.0 31.0 41.0 51 35.635715091834214 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 2.0 14 3.0 15 6.0 16 12.0 17 45.0 18 80.0 19 204.0 20 410.0 21 786.0 22 1239.0 23 1775.0 24 2590.0 25 3256.0 26 3703.0 27 3911.0 28 3814.0 29 3770.0 30 4133.0 31 5063.0 32 6541.0 33 8620.0 34 15394.0 35 21966.0 36 24806.0 37 38209.0 38 72794.0 39 192631.0 40 690.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.56014666580223 23.327018155535868 22.879673051479504 14.233162127182396 2 34.079388748418204 27.557947159010414 21.851475662553398 16.511188430017985 3 31.67649961460607 28.265583241487118 24.243559359069483 15.81435778483733 4 28.561892344227612 28.288874961880815 24.793916298681495 18.35531639521007 5 29.9269792559616 31.55067630031432 19.19934110844577 19.32300333527831 6 39.33755465750365 29.50724804721736 16.782765087391976 14.372432207887009 7 76.871081528225 5.817647440191904 11.962819690868445 5.3484513407146475 8 67.82308857817254 10.579723716974382 13.842485538723084 7.754702166129997 9 32.55270051890111 28.821943201819156 19.180131442141686 19.44522483713805 10 26.83614394763445 27.670083586060507 27.760849259347303 17.73292320695774 11 25.29024605181327 22.351887469774788 31.37298688700154 20.984879591410397 12 24.439257834542342 21.830104908790105 32.22973800416369 21.50089925250386 13 21.706922923615164 27.198486278295235 30.6807185375681 20.413872260521497 14 18.952256775609484 26.08552623680236 35.237971747383284 19.724245240204873 15 20.532011708291613 24.952396045690193 32.89631342491542 21.619278821102778 16 19.85895302516226 24.508652754065846 29.18380529082234 26.44858892994955 17 21.30880258946302 25.088784676449187 30.11595434822803 23.486458385859766 18 22.300021370753765 26.158042727100277 30.183428301121122 21.358507601024836 19 23.4715708944741 23.593792396333836 29.343245521146237 23.591391188045822 20 22.26448348809121 27.44989278604994 30.22592968781891 20.05969403803994 21 20.149018986353934 27.987523321735498 28.783523869210985 23.079933822699584 22 19.569127184799388 27.173753832928732 29.278412897369954 23.978706084901923 23 19.857512300189455 24.775426994863817 30.170942018023467 25.196118686923256 24 20.300535229327398 27.717387389334313 28.87933207990261 23.102745301435682 25 19.274979169518105 28.189705059585986 28.367154352069964 24.168161418825953 26 19.52110301903918 27.68665192324778 28.962654007496575 23.82959105021647 27 21.79072509286673 26.807329448178326 31.021209872807997 20.38073558614695 28 19.994621293434854 28.18130083057795 27.682569869158158 24.14150800682904 29 22.440251934773578 25.441041932300333 28.41998093440619 23.698725198519895 30 21.1901829000353 29.950270976355302 26.057912341490237 22.80163378211916 31 23.43243119937953 29.327397546445372 24.247881533987904 22.9922897201872 32 21.926153240310526 29.843177086710032 25.454008457055586 22.776661215923852 33 22.09255697466965 26.942037233135714 26.590980581428575 24.374425210766056 34 21.61999918358918 27.84201009948206 26.431540351104676 24.106450365824085 35 22.80811704449679 27.233063677642587 25.676120223696564 24.282699054164055 36 24.394835481214148 29.633311482337916 24.606622052216675 21.365230984231264 37 20.906840322050055 29.311069330086898 27.12741051297013 22.654679834892917 38 21.407252129271452 27.543539909282348 25.35531879641836 25.693889165027844 39 24.307671620359365 25.332267196853458 27.34808155463829 23.011979628148886 40 20.68160698463467 25.132966908948585 27.516406255627835 26.669019850788917 41 23.56065572195929 27.206410265645676 24.802320527689535 24.430613484705503 42 22.205173643377346 26.03149905032212 27.912365502320768 23.85096180397976 43 24.268772046093595 25.441282053129132 27.580758637746516 22.70918726303076 44 20.473422226064155 25.50827576436463 29.012118898229588 25.006183111341628 45 21.326331409965494 25.755840338858516 26.27330072492478 26.64452752625121 46 22.8787125681643 26.056231495688632 28.40581380550693 22.659242130640138 47 21.13183353863664 24.29974763300893 30.03287254146286 24.535546286891563 48 21.508823239854294 25.282562185291642 28.07468718259028 25.13392739226379 49 21.435106145412373 22.5367805079516 31.35401734152626 24.67409600510977 50 21.513385535601515 23.142125117359054 28.068444041041452 27.276045305997975 51 21.70836364858797 21.856037958300618 29.18116396170553 27.254434431405883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 363.0 1 575.5 2 788.0 3 2614.0 4 4440.0 5 2939.5 6 1439.0 7 1520.5 8 1602.0 9 1613.0 10 1624.0 11 1635.0 12 1646.0 13 1604.0 14 1562.0 15 1516.0 16 1470.0 17 1440.5 18 1411.0 19 1430.0 20 1449.0 21 1612.0 22 1775.0 23 1871.0 24 1967.0 25 2807.0 26 4209.0 27 4771.0 28 5496.0 29 6221.0 30 6738.0 31 7255.0 32 8037.5 33 8820.0 34 9494.0 35 10168.0 36 10989.5 37 11811.0 38 12438.5 39 13066.0 40 14998.0 41 16930.0 42 19366.0 43 21802.0 44 24236.5 45 26671.0 46 35167.5 47 43664.0 48 43365.0 49 43066.0 50 41593.0 51 40120.0 52 34238.0 53 28356.0 54 25120.5 55 21885.0 56 19291.5 57 16698.0 58 15947.0 59 15196.0 60 14516.5 61 13837.0 62 12498.0 63 11159.0 64 9668.5 65 8178.0 66 6963.0 67 5748.0 68 5247.0 69 4746.0 70 4308.5 71 3871.0 72 3255.0 73 2639.0 74 2237.5 75 1564.5 76 1293.0 77 995.5 78 698.0 79 559.0 80 420.0 81 315.0 82 210.0 83 137.5 84 65.0 85 60.0 86 55.0 87 32.5 88 10.0 89 6.5 90 3.0 91 3.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 416457.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.1854212670104 #Duplication Level Percentage of deduplicated Percentage of total 1 71.79764802310137 27.41623435742662 2 9.605965859410968 7.336157060362549 3 3.8084379601882627 4.362804236371877 4 2.31302237620477 3.532949353416022 5 1.8989281211582103 3.6255685131099407 6 1.5104303096843357 3.4605850601854393 7 1.3276435755083265 3.5487640456257763 8 1.1211809166269695 3.425021249434695 9 0.9986289304506543 3.4319759758814032 >10 5.516806512935813 31.649420754203305 >50 0.05411451966962018 1.4361380825212249 >100 0.03964203185100083 3.063056428974498 >500 0.0031461930040476843 0.7809015841047315 >1k 0.004404670205666759 2.9304232983819403 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2633 0.6322381422331718 No Hit GAATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC 1864 0.4475852248851622 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG 1859 0.4463846207411569 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC 1690 0.40580420067377904 No Hit GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 1491 0.35802015574236956 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC 1425 0.34217218104150005 No Hit CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 1234 0.29630910274049904 No Hit CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 869 0.20866500022811477 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 699 0.16784445933193584 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 595 0.14287189313662635 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 547 0.13134609335417582 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAATCACGT 540 0.12966524755256845 No Hit TGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCTT 496 0.11909993108532213 Illumina Single End Adapter 2 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 490 0.11765920611251583 No Hit GAACTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT 474 0.11381727285169899 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG 456 0.10949509793328004 No Hit TCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 433 0.10397231887085581 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.401208288010527E-4 0.0 0.0 0.3035127276045306 0.0 2 2.401208288010527E-4 0.0 0.0 1.1091181082320625 0.0 3 2.401208288010527E-4 0.0 0.0 1.5739920327909003 0.0 4 2.401208288010527E-4 0.0 0.0 2.168050963244705 0.0 5 2.401208288010527E-4 0.0 0.0 4.013379532580795 0.0 6 2.401208288010527E-4 0.0 0.0 4.784647634689776 0.0 7 2.401208288010527E-4 0.0 0.0 6.336068309573378 0.0 8 2.401208288010527E-4 0.0 0.0 7.687228213236901 0.0 9 2.401208288010527E-4 0.0 0.0 9.142840677428882 0.0 10 2.401208288010527E-4 0.0 0.0 10.67072951108998 0.0 11 2.401208288010527E-4 0.0 0.0 12.925223972703064 0.0 12 2.401208288010527E-4 0.0 0.0 14.817135982826558 0.0 13 4.802416576021054E-4 0.0 0.0 15.407352980019546 0.0 14 4.802416576021054E-4 0.0 0.0 15.763212048302705 0.0 15 4.802416576021054E-4 0.0 0.0 16.608917607340015 0.0 16 4.802416576021054E-4 0.0 0.0 17.760296981441062 0.0 17 7.203624864031581E-4 0.0 0.0 19.830378646534935 0.0 18 7.203624864031581E-4 0.0 0.0 20.53153146663401 0.0 19 7.203624864031581E-4 0.0 0.0 21.634166312488443 0.0 20 7.203624864031581E-4 0.0 0.0 22.33748022004673 0.0 21 7.203624864031581E-4 0.0 0.0 23.108268080498107 0.0 22 7.203624864031581E-4 0.0 0.0 23.80725981313797 0.0 23 7.203624864031581E-4 0.0 0.0 24.35713651109238 0.0 24 7.203624864031581E-4 0.0 0.0 24.85394650588176 0.0 25 7.203624864031581E-4 0.0 0.0 25.320501276242204 0.0 26 7.203624864031581E-4 0.0 0.0 25.90543561520157 0.0 27 7.203624864031581E-4 0.0 0.0 26.385677272803676 0.0 28 7.203624864031581E-4 0.0 0.0 26.853912888965727 0.0 29 7.203624864031581E-4 0.0 0.0 27.38169847067044 0.0 30 7.203624864031581E-4 0.0 0.0 27.86746290733497 0.0 31 7.203624864031581E-4 0.0 0.0 28.348905169081082 0.0 32 7.203624864031581E-4 0.0 0.0 28.796970635623847 0.0 33 7.203624864031581E-4 0.0 0.0 29.23543126901457 0.0 34 7.203624864031581E-4 0.0 0.0 29.71447232247267 0.0 35 7.203624864031581E-4 0.0 0.0 30.178385763716303 0.0 36 7.203624864031581E-4 0.0 0.0 30.641338721644733 0.0 37 7.203624864031581E-4 0.0 0.0 31.087963463214688 0.0 38 7.203624864031581E-4 0.0 0.0 31.58765490794968 0.0 39 7.203624864031581E-4 0.0 0.0 32.03403952869084 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCCCA 20 7.0281007E-4 45.0 14 CGGCATA 25 3.8865066E-5 45.0 6 CGATTTA 20 7.0281007E-4 45.0 9 CCGTCGA 20 7.0281007E-4 45.0 41 CGGATTA 25 3.8865066E-5 45.0 6 TCTCGTA 25 3.8865066E-5 45.0 27 ACAGACG 20 7.0281007E-4 45.0 1 TGTAGCG 45 3.8380676E-10 45.0 1 TGGCTAG 35 1.2094279E-7 45.0 1 CGTTTTT 1385 0.0 41.588448 1 GACCTAT 55 6.002665E-11 40.909092 33 TGATTCA 50 1.0786607E-9 40.5 44 ACGGATT 50 1.0786607E-9 40.5 5 TCGTTGA 40 3.4511504E-7 39.375 23 TTAATCG 40 3.4511504E-7 39.375 19 CGGATTC 40 3.4511504E-7 39.375 6 ACGGAAT 155 0.0 39.19355 5 TACGGAT 75 0.0 39.0 4 TAAGCGG 105 0.0 38.57143 2 ATTACGG 35 6.238699E-6 38.571426 2 >>END_MODULE