SRR3551654_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551654_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	553438
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG	4247	0.7673849645308056	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC	4116	0.7437147431148565	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC	3731	0.6741495885718003	No Hit
GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	2639	0.47683751386785866	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2444	0.44160321481358344	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCT	889	0.16063226594487548	No Hit
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT	880	0.15900606752698587	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	790	0.14274408334808958	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCC	754	0.13623928967653107	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	752	0.13587791225033338	No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCT	732	0.1322641379883564	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTA	674	0.12178419262862325	No Hit
TCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	664	0.11997730549763479	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCCTAAT	654	0.11817041836664631	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTC	639	0.1154600876701636	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	562	0.10154705676155232	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATACG	25	3.888174E-5	45.000004	1
GTCGTAA	30	2.1634532E-6	45.000004	9
CGGTCTA	25	3.888174E-5	45.000004	31
CTTAACG	20	7.0301135E-4	45.0	1
CGTATGT	20	7.0301135E-4	45.0	24
TTCGTAA	20	7.0301135E-4	45.0	26
TCTAGCG	20	7.0301135E-4	45.0	1
TACGAAT	80	0.0	45.0	12
ACGTAGG	35	1.2104101E-7	45.0	2
ATGTTCG	20	7.0301135E-4	45.0	27
GCTACGA	90	0.0	42.5	10
CGAATAT	80	0.0	42.1875	14
CCATTAC	45	1.9252184E-8	40.0	6
CGTTTTT	1185	0.0	39.683544	1
CGTATGG	40	3.453897E-7	39.375	2
CCAATCG	40	3.453897E-7	39.375	40
ATGCGAG	40	3.453897E-7	39.375	1
GCGTAAG	40	3.453897E-7	39.375	1
GTGTAAG	75	0.0	39.000004	1
AGCTACG	105	0.0	38.57143	9