SRR3551652_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551652_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	603513
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC	8514	1.4107401166172062	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG	8381	1.3887024803111117	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC	7977	1.32176108882493	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5209	0.8631131392364374	No Hit
GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	3104	0.5143219781512577	No Hit
GAACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCT	2013	0.3335470818358511	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCT	1782	0.2952711871989502	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCACATGTT	1374	0.2276670096584498	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTC	1363	0.22584434800907355	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTA	1259	0.2086119105967891	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	839	0.13901937489333285	No Hit
CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT	807	0.1337170864587838	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCC	773	0.12808340499707546	No Hit
CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC	703	0.11648464904649941	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTT	636	0.10538298263666233	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGATG	25	3.888595E-5	45.000004	1
ACGATCG	50	2.1827873E-11	45.000004	40
CGATCGA	85	0.0	45.000004	41
TGATCGG	20	7.0306216E-4	45.0	2
GCAACCG	20	7.0306216E-4	45.0	1
GTATGCG	20	7.0306216E-4	45.0	1
CGTAAGC	20	7.0306216E-4	45.0	43
TACAACG	20	7.0306216E-4	45.0	1
CTCACGA	30	2.1637825E-6	44.999996	24
CGATCAC	30	2.1637825E-6	44.999996	34
CGAATGC	85	0.0	42.352943	45
CGTTTTT	2215	0.0	41.241535	1
CGTATGG	105	0.0	40.714287	2
GCGAATG	50	1.0804797E-9	40.500004	1
TACGGCT	905	0.0	40.276245	7
GATGAAT	735	0.0	40.10204	20
CCGATGA	660	0.0	39.886364	18
CGATGAA	700	0.0	39.535713	19
CCGATCG	40	3.4545883E-7	39.375	40
TATTAGT	120	0.0	39.374996	30