##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551652_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 603513 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.9400195190493 33.0 31.0 34.0 30.0 34.0 2 32.031868410456774 33.0 31.0 34.0 30.0 34.0 3 32.00365029419416 33.0 31.0 34.0 30.0 34.0 4 35.699963381070496 37.0 35.0 37.0 33.0 37.0 5 35.716887622967526 37.0 35.0 37.0 35.0 37.0 6 35.591190247765994 37.0 35.0 37.0 33.0 37.0 7 35.89426905468482 37.0 35.0 37.0 35.0 37.0 8 35.593750258900805 37.0 35.0 37.0 33.0 37.0 9 37.397360123145646 39.0 37.0 39.0 34.0 39.0 10 37.12211667354307 39.0 37.0 39.0 34.0 39.0 11 37.20285561371503 39.0 37.0 39.0 34.0 39.0 12 37.140638229831005 39.0 37.0 39.0 34.0 39.0 13 37.16800135208355 39.0 37.0 39.0 34.0 39.0 14 38.26030425193824 40.0 38.0 41.0 33.0 41.0 15 38.26047989024263 40.0 38.0 41.0 33.0 41.0 16 38.0970666746201 40.0 37.0 41.0 33.0 41.0 17 38.05337581791942 40.0 37.0 41.0 33.0 41.0 18 37.86573777201154 39.0 37.0 41.0 33.0 41.0 19 37.69859472786833 39.0 37.0 41.0 33.0 41.0 20 37.838437614434156 40.0 36.0 41.0 33.0 41.0 21 37.79401437914345 39.0 36.0 41.0 33.0 41.0 22 37.95478142144411 40.0 36.0 41.0 34.0 41.0 23 37.931424840889925 40.0 36.0 41.0 33.0 41.0 24 37.79639875197386 40.0 36.0 41.0 33.0 41.0 25 37.491739200315486 39.0 35.0 41.0 33.0 41.0 26 37.66662027164286 39.0 36.0 41.0 33.0 41.0 27 37.70901372464222 40.0 36.0 41.0 33.0 41.0 28 37.56405910063246 40.0 36.0 41.0 33.0 41.0 29 37.618462236936075 40.0 36.0 41.0 33.0 41.0 30 37.344507906209145 39.0 35.0 41.0 33.0 41.0 31 37.27204219296022 39.0 35.0 41.0 32.0 41.0 32 37.215188405220765 40.0 35.0 41.0 32.0 41.0 33 37.10154876531243 40.0 35.0 41.0 32.0 41.0 34 36.98486528044963 40.0 35.0 41.0 32.0 41.0 35 36.92923598994553 40.0 35.0 41.0 31.0 41.0 36 36.70456643021774 39.0 35.0 41.0 31.0 41.0 37 36.77100576126778 39.0 35.0 41.0 31.0 41.0 38 36.520755973773554 39.0 35.0 41.0 31.0 41.0 39 36.45342188155019 39.0 35.0 41.0 31.0 41.0 40 36.36449587664226 39.0 35.0 41.0 30.0 41.0 41 36.16685307524445 39.0 35.0 41.0 30.0 41.0 42 36.274779499364556 39.0 35.0 41.0 30.0 41.0 43 36.18798269465612 39.0 35.0 41.0 30.0 41.0 44 36.30908696250122 39.0 35.0 41.0 31.0 41.0 45 36.27216977927567 39.0 35.0 41.0 31.0 41.0 46 36.16163860596209 39.0 35.0 41.0 31.0 41.0 47 36.04995252794886 38.0 35.0 40.0 30.0 41.0 48 36.023535532788856 38.0 35.0 40.0 30.0 41.0 49 36.01569477376626 38.0 35.0 40.0 30.0 41.0 50 35.85288303648803 38.0 35.0 40.0 30.0 41.0 51 35.048724716783234 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 8.0 9 9.0 10 22.0 11 16.0 12 20.0 13 25.0 14 33.0 15 30.0 16 52.0 17 110.0 18 177.0 19 339.0 20 790.0 21 1318.0 22 2104.0 23 2606.0 24 3408.0 25 4430.0 26 5764.0 27 6601.0 28 7050.0 29 7502.0 30 8865.0 31 10858.0 32 14219.0 33 19971.0 34 35282.0 35 45857.0 36 49876.0 37 74500.0 38 127986.0 39 173625.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.95412692021547 18.217006095974735 22.219073988464206 14.609792995345586 2 30.743165433056124 29.52463327219132 23.43478930859816 16.2974119861544 3 29.647745781781005 28.63749413848583 26.259252079077005 15.455508000656156 4 27.018804897326156 23.42766435851423 31.917622321308738 17.635908422850875 5 28.86234430741343 27.03570594171128 24.282824065098847 19.819125685776445 6 25.045359420592433 36.00485822177816 24.39698896295523 14.552793394674183 7 72.87200110022485 5.923981753499925 16.25283962400147 4.9511775222737535 8 72.12106450068184 10.637716171814029 11.425603093885302 5.815616233618829 9 65.97654068760738 7.496441667370878 13.466652748159527 13.060364896862206 10 39.29575667798374 23.629979801594995 20.22392226845155 16.850341251969716 11 30.873734285756893 21.86895725527039 26.630080876468277 20.62722758250444 12 25.658105127810003 19.35716380591636 31.387062084826674 23.59766898144696 13 24.71645184113681 20.57602735980832 34.97836832015218 19.72915247890269 14 21.49879124393344 26.388329663155556 28.926137465141593 23.18674162776941 15 18.801583395883767 22.154452348168142 36.72282121511881 22.321143040829277 16 20.966905435342735 22.413933088433886 29.96522030179963 26.65394117442375 17 20.92912663024657 24.255484140358202 30.294293577768833 24.521095651626393 18 20.95116426655267 23.536692664449646 30.715991204829056 24.796151864168625 19 23.011434716402132 24.20229555949913 27.6375156790326 25.148754045066134 20 24.673702140633257 24.502703338619053 30.00830139533034 20.815293125417348 21 23.286159535917207 27.45574660363571 28.161282358457896 21.096811501989187 22 22.19902471032107 22.200018889402546 28.743042817636073 26.857913582640307 23 23.046562377281017 25.67020097330132 28.372876806299118 22.910359843118542 24 23.26395620309753 23.7822548975747 28.214470939316964 24.739317960010805 25 21.638804797908247 28.6736159784462 26.321719664696534 23.36585955894902 26 21.695141612525333 24.30950120378517 28.85289960613939 25.142457577550108 27 24.88181696168931 24.593505028060704 26.312606356449653 24.212071653800333 28 21.191092818216013 25.215364043525163 29.415604966255906 24.17793817200292 29 25.239224341480632 22.587748731178948 26.205235015650036 25.967791911690384 30 22.587251641638208 26.73612664515926 26.365794937308724 24.31082677589381 31 24.274042149879126 25.558355826635054 23.813571538641256 26.35403048484457 32 25.702014703908617 25.97773370250517 23.66709582063684 24.653155772949383 33 22.868935714723627 25.861083356945088 24.239908668081714 27.03007226024957 34 24.245873742570584 24.7775938546477 26.67167070137677 24.30486170140494 35 24.987365640839553 22.710695544255053 25.078995812849104 27.222943002056294 36 23.88448964645335 27.811497018291238 26.365629240795148 21.938384094460268 37 21.79737636140398 24.812224425985853 28.14073599077402 25.24966322183615 38 22.303744906903415 28.187296711089903 24.929371861086672 24.579586520920014 39 23.0752278741303 23.919948700359395 28.750499160747157 24.254324264763145 40 23.806115195530168 24.371803092891124 29.06316848187197 22.758913229706735 41 21.22489490698626 23.968663475351814 30.09446358239176 24.71197803527016 42 23.752098132103203 23.10936135592771 29.51899959072961 23.619540921239476 43 23.56950057413842 22.857668351800207 28.701121599700418 24.87170947436095 44 22.9978476022886 23.03164969105885 28.518026952194898 25.452475754457648 45 22.060833817995633 22.49910109641383 27.823261470755394 27.61680361483514 46 25.55520759287704 24.48348254304381 26.982848753879367 22.97846111019978 47 21.0111464044685 23.285828142890043 32.4034444991243 23.299580953517157 48 22.114519488395445 23.93154745630997 28.3437142199091 25.610218835385485 49 22.14136232359535 21.722978626806714 31.95970923575797 24.175949813839967 50 21.80234725681137 21.679566140248845 30.345659496978524 26.172427105961265 51 22.14152802010893 21.615772982520674 27.979016193520273 28.263682803850127 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 229.0 1 605.0 2 981.0 3 4453.5 4 7926.0 5 5108.5 6 2291.0 7 2205.0 8 2119.0 9 2097.5 10 2076.0 11 2057.0 12 2038.0 13 2000.0 14 1962.0 15 1825.0 16 1688.0 17 1630.5 18 1573.0 19 1600.5 20 1628.0 21 1758.0 22 1888.0 23 1998.5 24 2109.0 25 2368.0 26 3413.5 27 4200.0 28 5164.5 29 6129.0 30 6708.0 31 7287.0 32 7657.0 33 8027.0 34 9650.5 35 11274.0 36 12390.0 37 13506.0 38 14413.5 39 15321.0 40 17159.5 41 18998.0 42 21717.0 43 24436.0 44 28021.0 45 31606.0 46 53560.0 47 75514.0 48 65516.5 49 55519.0 50 54633.5 51 53748.0 52 47209.0 53 40670.0 54 37116.0 55 33562.0 56 31588.5 57 29615.0 58 28845.0 59 28075.0 60 27139.5 61 26204.0 62 24657.5 63 23111.0 64 20862.5 65 18614.0 66 16071.0 67 13528.0 68 11994.0 69 10460.0 70 9159.5 71 7859.0 72 6842.5 73 5826.0 74 4976.5 75 3309.0 76 2491.0 77 1922.5 78 1354.0 79 1061.5 80 769.0 81 535.0 82 301.0 83 212.5 84 124.0 85 86.0 86 48.0 87 54.0 88 60.0 89 35.5 90 11.0 91 6.5 92 2.0 93 1.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 603513.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.09015464647672 #Duplication Level Percentage of deduplicated Percentage of total 1 73.14070187499566 23.47096434120461 2 8.581733302245611 5.507782976077621 3 3.2174490151741217 3.097453093922754 4 1.843924291757577 2.366872627155829 5 1.370777563307934 2.1994231996236064 6 1.1595764119419336 2.2326591830173945 7 1.0087082275252843 2.2658722110121867 8 0.9180868116551792 2.356923821192436 9 0.8405913711880283 2.4277236386325973 >10 7.797054975221402 42.40943604721051 >50 0.0684798823005184 1.4961516839841769 >100 0.044096893905610585 2.5434745107265853 >500 0.0036315089098738124 0.8035967707342079 >1k 0.003112721922748982 1.8137946586180227 >5k 0.0020751479484993215 5.007871236887447 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTC 8514 1.4107401166172062 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCG 8381 1.3887024803111117 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGC 7977 1.32176108882493 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5209 0.8631131392364374 No Hit GCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC 3104 0.5143219781512577 No Hit GAACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCT 2013 0.3335470818358511 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCT 1782 0.2952711871989502 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCACATGTT 1374 0.2276670096584498 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTC 1363 0.22584434800907355 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCACATGTTCGTA 1259 0.2086119105967891 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 839 0.13901937489333285 No Hit CTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGCT 807 0.1337170864587838 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCC 773 0.12808340499707546 No Hit CCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTTCTGC 703 0.11648464904649941 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCACATGTTCGTATGCCGTCTT 636 0.10538298263666233 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6569651357965776E-4 0.0 0.0 0.13918507140691252 0.0 2 1.6569651357965776E-4 0.0 0.0 0.9416532866731951 0.0 3 1.6569651357965776E-4 0.0 0.0 1.2281425586524235 0.0 4 1.6569651357965776E-4 0.0 0.0 1.9391462984227348 0.0 5 1.6569651357965776E-4 0.0 0.0 4.419954499737371 0.0 6 1.6569651357965776E-4 0.0 0.0 5.4343485558720355 0.0 7 3.313930271593155E-4 0.0 0.0 6.539212908421194 0.0 8 3.313930271593155E-4 0.0 0.0 8.06594058454416 0.0 9 3.313930271593155E-4 0.0 0.0 8.699232659445613 0.0 10 3.313930271593155E-4 0.0 0.0 11.176229840947917 0.0 11 3.313930271593155E-4 0.0 0.0 12.392939340163343 0.0 12 3.313930271593155E-4 0.0 0.0 14.795373090554802 0.0 13 3.313930271593155E-4 0.0 0.0 15.29527947202463 0.0 14 3.313930271593155E-4 0.0 0.0 15.533551058552177 0.0 15 3.313930271593155E-4 0.0 0.0 16.042239355241726 0.0 16 3.313930271593155E-4 0.0 0.0 16.667080907950616 0.0 17 3.313930271593155E-4 0.0 0.0 17.354058653251876 0.0 18 3.313930271593155E-4 0.0 0.0 18.097041820143062 0.0 19 3.313930271593155E-4 0.0 0.0 18.777226008387558 0.0 20 3.313930271593155E-4 0.0 0.0 19.24449017668219 0.0 21 3.313930271593155E-4 0.0 0.0 19.736940215040935 0.0 22 3.313930271593155E-4 0.0 0.0 20.27230565041681 0.0 23 3.313930271593155E-4 0.0 0.0 20.787621807649547 0.0 24 3.313930271593155E-4 0.0 0.0 21.203520056734487 0.0 25 4.970895407389733E-4 0.0 0.0 21.576999998343034 0.0 26 4.970895407389733E-4 0.0 0.0 21.90325643358138 0.0 27 4.970895407389733E-4 0.0 0.0 22.259503937777644 0.0 28 4.970895407389733E-4 0.0 0.0 22.600341666211 0.0 29 4.970895407389733E-4 0.0 0.0 22.967525140303522 0.0 30 6.62786054318631E-4 0.0 0.0 23.37016766830209 0.0 31 9.941790814779466E-4 0.0 0.0 23.73370581909586 0.0 32 9.941790814779466E-4 0.0 0.0 24.099398024566167 0.0 33 9.941790814779466E-4 0.0 0.0 24.45050893684146 0.0 34 9.941790814779466E-4 0.0 0.0 24.796980346736525 0.0 35 9.941790814779466E-4 0.0 0.0 25.16151267661177 0.0 36 9.941790814779466E-4 0.0 0.0 25.512789285400647 0.0 37 9.941790814779466E-4 0.0 0.0 25.851472959157466 0.0 38 9.941790814779466E-4 0.0 0.0 26.196453100430315 0.0 39 9.941790814779466E-4 0.0 0.0 26.539113490513046 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGATG 25 3.888595E-5 45.000004 1 ACGATCG 50 2.1827873E-11 45.000004 40 CGATCGA 85 0.0 45.000004 41 TGATCGG 20 7.0306216E-4 45.0 2 GCAACCG 20 7.0306216E-4 45.0 1 GTATGCG 20 7.0306216E-4 45.0 1 CGTAAGC 20 7.0306216E-4 45.0 43 TACAACG 20 7.0306216E-4 45.0 1 CTCACGA 30 2.1637825E-6 44.999996 24 CGATCAC 30 2.1637825E-6 44.999996 34 CGAATGC 85 0.0 42.352943 45 CGTTTTT 2215 0.0 41.241535 1 CGTATGG 105 0.0 40.714287 2 GCGAATG 50 1.0804797E-9 40.500004 1 TACGGCT 905 0.0 40.276245 7 GATGAAT 735 0.0 40.10204 20 CCGATGA 660 0.0 39.886364 18 CGATGAA 700 0.0 39.535713 19 CCGATCG 40 3.4545883E-7 39.375 40 TATTAGT 120 0.0 39.374996 30 >>END_MODULE