SRR3551644_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551644_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	450492
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3659	0.8122230805430506	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGC	2256	0.5007858075171145	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTC	2088	0.4634932473828614	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCG	2068	0.45905365689068844	No Hit
GCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	1327	0.29456682915567867	No Hit
CTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGCT	817	0.18135727160526713	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCTGC	782	0.17358798824396438	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCC	708	0.15716150342292426	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATCTGGTCGTATGCCGTCTTCT	458	0.10166662227076173	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGCGT	30	2.162551E-6	45.000004	34
TCGTTCG	20	7.0287153E-4	45.0	45
TCCATAT	25	3.887016E-5	45.0	43
CGAAAGG	35	1.2097371E-7	45.0	2
TAGACAC	20	7.0287153E-4	45.0	37
ATTACGG	20	7.0287153E-4	45.0	2
TTAAGCG	25	3.887016E-5	45.0	1
TAAGCGG	50	2.1827873E-11	45.0	2
GCGTAAG	25	3.887016E-5	45.0	1
CGTTTTT	1740	0.0	42.672417	1
TTTAGCG	50	1.0786607E-9	40.5	1
TTAGGCG	45	1.9237632E-8	40.000004	1
AAGCGGC	45	1.9237632E-8	40.000004	22
ATCGTTG	45	1.9237632E-8	40.000004	23
AATCGTT	45	1.9237632E-8	40.000004	22
TTAATCG	40	3.451987E-7	39.375	20
GCGGCTA	40	3.451987E-7	39.375	24
CGGGTTC	35	6.239832E-6	38.571426	6
CATGCGG	35	6.239832E-6	38.571426	2
CGTAAGG	70	0.0	38.571426	2