SRR3551641_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551641_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337967
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	5802	1.7167356576233774	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	5798	1.7155521101172597	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	5223	1.545417156112875	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	2674	0.7912015078395227	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1834	0.5426565315548559	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	1282	0.37932697571064633	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	959	0.2837555145916613	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTA	935	0.27665422955495655	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATGAGT	905	0.2677776232590756	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	844	0.24972852379078428	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	775	0.2293123293102581	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	672	0.19883598102773348	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	639	0.18907171410226442	No Hit
TCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	488	0.14439279574633027	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	454	0.13433264194433184	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC	432	0.12782313066068582	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	427	0.12634369627803899	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGGC	30	2.1609376E-6	45.000004	17
TGATTCG	30	2.1609376E-6	45.000004	15
ACTAAGG	30	2.1609376E-6	45.000004	2
TAGATAG	30	2.1609376E-6	45.000004	1
TTCGGCA	30	2.1609376E-6	45.000004	18
GATTCGG	30	2.1609376E-6	45.000004	16
GGTAATC	20	7.0262124E-4	45.0	8
CTACTCG	20	7.0262124E-4	45.0	36
CCTACGC	20	7.0262124E-4	45.0	38
GTGATAG	20	7.0262124E-4	45.0	1
ATCACAC	20	7.0262124E-4	45.0	12
TACGAAT	95	0.0	45.0	12
GTACTAG	20	7.0262124E-4	45.0	1
CAGTCGA	20	7.0262124E-4	45.0	41
GCTACGA	95	0.0	45.0	10
CAGTACG	20	7.0262124E-4	45.0	2
AGCTACG	95	0.0	45.0	9
GATAGCG	45	3.8380676E-10	45.0	1
ACGCGTG	20	7.0262124E-4	45.0	41
TCAAAGT	20	7.0262124E-4	45.0	12