SRR3551636_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551636_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	573464
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7162	1.2489014131663017	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	4327	0.7545373380020368	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	4206	0.7334374956405284	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	3348	0.5838204316225605	No Hit
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	1825	0.3182414240475427	No Hit
GAACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	1158	0.20193072276550925	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCT	799	0.13932871113095155	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACGACGT	731	0.12747094848150886	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	617	0.10759175815744318	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTCG	25	3.8883525E-5	45.0	29
AAGTCGA	20	7.030327E-4	45.0	23
CTCACGT	30	2.1635915E-6	44.999996	45
CGTTTTT	3115	0.0	42.54414	1
CGATGAA	615	0.0	40.609756	19
GTACGAG	50	1.0786607E-9	40.5	1
TACGGCT	415	0.0	40.120483	7
CGTAAGG	45	1.9254003E-8	40.000004	2
CGTATGG	40	3.454188E-7	39.375	2
CGTTCGG	40	3.454188E-7	39.375	45
CGATACG	40	3.454188E-7	39.375	10
GTCGAAT	75	0.0	39.000004	43
CCGATGA	615	0.0	38.780487	18
GATGAAT	665	0.0	38.57143	20
ATAGCGG	70	0.0	38.571426	2
CGAATAT	70	0.0	38.571426	14
CGTGTAC	70	0.0	38.571426	18
CGGTCTA	35	6.2428153E-6	38.571426	31
ACGGTCT	35	6.2428153E-6	38.571426	30
TACGGGA	165	0.0	38.18182	4