SRR3551635_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551635_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	500441
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6219	1.2427039351292162	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTC	2619	0.5233384155175136	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCG	2516	0.502756568706401	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGC	2323	0.4641905839049958	No Hit
GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	1728	0.3452954494136172	Illumina PCR Primer Index 6 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGCT	854	0.17064948715233164	Illumina PCR Primer Index 6 (95% over 24bp)
GAACTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCT	682	0.1362798012153281	Illumina PCR Primer Index 6 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	678	0.1354805061935373	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	561	0.11210112680615698	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	20	7.029464E-4	45.000004	1
ACGCATG	20	7.029464E-4	45.000004	1
TAACGCG	30	2.1630349E-6	45.000004	1
TAGCCGT	40	6.8012014E-9	45.000004	44
CTCGGTA	20	7.029464E-4	45.000004	38
TTAAGCG	20	7.029464E-4	45.000004	1
TCCACGA	20	7.029464E-4	45.000004	35
CGCAATC	20	7.029464E-4	45.000004	20
CGACTCG	20	7.029464E-4	45.000004	35
TGCGTAG	60	0.0	45.000004	1
TTGTGCG	25	3.8876373E-5	45.0	1
CGTTTTT	2860	0.0	43.426575	1
TGATTCG	50	1.0786607E-9	40.5	15
TCACGAC	45	1.9244908E-8	40.0	25
ACGGGAC	80	0.0	39.375004	5
CGAATAT	40	3.4530058E-7	39.375004	14
CGTATGG	35	6.24122E-6	38.57143	2
AATGCGG	70	0.0	38.57143	2
TTAGTCA	70	0.0	38.57143	32
TATAGCG	35	6.24122E-6	38.57143	1