SRR3551632_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551632_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339761
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG	5348	1.5740476393700278	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC	4508	1.3268150258564109	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC	4505	1.3259320522367193	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1990	0.5857058343953544	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	1548	0.4556143877608083	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT	1045	0.30756914419253534	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTCGCTT	965	0.2840231810007623	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTA	887	0.2610658668887836	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT	864	0.2542964024711489	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTC	599	0.17630039939840064	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTT	485	0.14274740185012408	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC	478	0.1406871300708439	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	423	0.12449928037649996	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	422	0.12420495583660279	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	413	0.12155603497752833	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	351	0.10330791350390421	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.026265E-4	45.0	38
GATCATC	20	7.026265E-4	45.0	22
TCGGATT	20	7.026265E-4	45.0	31
ATACGGA	20	7.026265E-4	45.0	28
CGTTTAT	20	7.026265E-4	45.0	39
TACACGG	30	2.1609721E-6	44.999996	2
CGAATGC	105	0.0	42.85714	45
TATGCCC	100	0.0	42.75	10
CGTGTAC	100	0.0	42.75	18
ACCTATG	80	0.0	42.1875	34
TACGAAT	80	0.0	42.1875	12
CATCGAA	80	0.0	42.1875	42
ATCGAAT	80	0.0	42.1875	43
GATGAAT	600	0.0	41.25	20
CGATGAA	580	0.0	41.12069	19
TCGTGTA	105	0.0	40.714283	17
CATATGC	50	1.0768417E-9	40.5	33
CGTTTTT	1040	0.0	40.45673	1
ACACGCG	45	1.9213985E-8	40.0	36
CTACGAA	85	0.0	39.705883	11