SRR3551629_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551629_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444137
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCG	5951	1.3399018771235	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTC	5944	1.3383257868630625	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGC	5838	1.3144592772050065	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4344	0.9780765844773122	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	2089	0.4703503648648953	Illumina Single End Adapter 1 (95% over 24bp)
GAACTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCT	1332	0.29990746098613713	Illumina Single End Adapter 1 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCT	1237	0.27851766459448324	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAAGAACT	1041	0.23438713730222885	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAAGAACTCGTA	1041	0.23438713730222885	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTC	926	0.20849422588075303	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	580	0.13059033586483448	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCC	570	0.12833877834992355	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	570	0.12833877834992355	No Hit
CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT	552	0.12428597482308386	Illumina Single End Adapter 1 (96% over 25bp)
GAATGCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTT	486	0.10942569522467166	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAACGA	20	7.028606E-4	45.0	37
GCCGTTA	20	7.028606E-4	45.0	45
TAGTAAG	35	1.2096825E-7	45.0	1
CGTTTTT	1945	0.0	43.1491	1
ATAGCGG	70	0.0	41.785713	2
CGAATAT	65	0.0	41.53846	14
CGAATGC	90	0.0	40.0	45
CTCGAAT	90	0.0	40.0	43
TATGGGC	120	0.0	39.375004	4
TAGCTAG	40	3.4518416E-7	39.375	1
CGATGAA	750	0.0	39.3	19
TACGGCT	760	0.0	38.782898	7
CCGATGA	745	0.0	38.65772	18
GATGAAT	810	0.0	38.61111	20
CATATTA	70	0.0	38.571426	28
AGACCTA	70	0.0	38.571426	32
TTAGTCA	70	0.0	38.571426	32
CTAGGCG	35	6.2396357E-6	38.571426	1
ACGGCTG	765	0.0	38.529415	8
AACGGGC	65	9.094947E-12	38.07692	4